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1437 software items. Page 3 of 30. 48 items per page.
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Research Software Directory

A content management system for research software, which promotes the visibility, reuse, and impact of research software.

  • FAIR
  • Research Software Impact
  • Software Citation
  • CSS
  • Dockerfile
  • Go
  • + 9
26
41

sv-callers

Highly portable parallel workflow to detect structural variants in cancer genomes.

  • Big data
  • High performance computing
  • Workflow technologies
  • Python
  • Shell
4
41

KNIME Silicos-it nodes

A node for the KNIME workflow systems that allows you to use the Silicos-it software to filter or align molecules.

  • Workflow technologies
  • Java
2
40

Code accompanying the paper "Modeling the effect of prior austenite grain size on bainite formation kinetics."

Code accompanying the paper "Modeling the effect of prior austenite grain size on bainite formation kinetics."

  • Bainite
  • Grain size
  • Nucleation
  • + 2
3
40

Software accompanying manuscript "Annual Satellite-Based NDVI-Derived Land Cover of Europe for 2001-2019"

Software accompanying manuscript "Annual Satellite-Based NDVI-Derived Land Cover of Europe for 2001-2019"

  • Classification trees
  • CORINE
  • Europe
  • + 3
2
40

BIAS

A toolbox for detecting structural bias in continuous optimization heuristics.

  • Bias
  • Metaheuristics
  • optimization
  • + 1
  • Dockerfile
  • Jupyter Notebook
  • Python
  • + 1
3
40

KNIME node archetype

Want to write your own KNIME node Then use the KNIME node archetype to generate a node skeleton repository with sample code.

  • Workflow technologies
  • Java
1
40

KNIME GPCRdb nodes

A node for the KNIME workflow systems that allows you to retrieve data about your favorite G protein-coupled receptors from gpcrdb.org.

  • Workflow technologies
  • Java
2
40

KNIME node for Kripo

A node for the KNIME workflow systems that allows you to compare different binding sites in proteins with each other.

  • Workflow technologies
  • Java
1
40

KNIME Testflow

Allows you to test KNIME nodes automatically using JUnit.

  • Workflow technologies
  • Java
1
40

talkr

{talkr} is an R package that offers a set of convenience functions for quality control, visualisation and analysis of conversational data. Most notably it provides a range of plotting functions that play well with ggplot and the tidyverse.

  • conversation
  • talk
  • turn-taking
  • + 1
  • R
  • Rez
4
40

KNIME Pharmacophore

A plugin for the KNIME workflow system that adds a Pharmacophore data type and nodes to read, write, and align them.

  • Workflow technologies
  • Java
1
39

KNIME PLANTS

A node for the KNIME workflow system that allows you to use the PLANTS protein-ligand docking algorithm.

  • Workflow technologies
  • Java
  • Mustache
1
39

KNIME Python node archetype

Want to write your own KNIME node wrapping a Python library. Then use the KNIME Python node archetype to generate a node skeleton repository with sample code

  • Big data
  • Workflow technologies
  • Java
  • Python
1
39

KNIME Python wrapper

If you are developing a KNIME node which calls some Python code, then the KNIME Python wrapper can help you.

  • Workflow technologies
  • Java
  • Python
1
39

BlueObelisk Euclid

A library of numeric, geometric and XML routines

  • HTML
  • Java
1
39

CMLXOM

Java library for working with Chemical Markup Language files.

  • Chemical Markup Language
  • Chemistry
  • XML
  • Batchfile
  • HTML
  • Java
  • + 1
2
39

KNIME molecule viewer nodes

A 3D viewer for large molecules for the KNIME workflow system.

  • Visualization
  • Workflow technologies
  • CSS
  • Java
  • JavaScript
2
39

KNIME ss-TEA node

A node for the KNIME workflow systems that allows you to identify which residue position in a big protein sequence alignment is specific to ligand binding.

  • Workflow technologies
  • Java
1
39

GreenspaceAccessibility (Github) code repository: spatial analysis underlying the journal paper "Measuring children's and adolescents' accessibility to greenspaces from different locations and commuting settings"

GreenspaceAccessibility (Github) code repository: spatial analysis underlying the journal paper "Measuring children's and adolescents' accessibility to greenspaces from different locations and commuting settings"

  • Activity setting
  • Betweenness
  • Exposure
  • + 3
2
38

trip-planning

Code underlying the publication: Dealing with Uncertainty: Understanding the Impact of Prognostic Versus Diagnostic Tasks on Trust and Reliance in Human-AI Decision Making

  • Diagnostic
  • Empirical Studies
  • Human-AI Decision-Making
  • + 6
  • CSS
  • HTML
  • JavaScript
  • + 3
3
38

Code supporting the publication: Can you hear it? backdoor attacks via ultrasonic triggers.

Code supporting the publication: Can you hear it? backdoor attacks via ultrasonic triggers.

  • backdoor attack
  • deep learning
  • Inaudible trigger
  • + 3
  • Other
  • Python
  • Shell
1
37

finite-strain-inverse-designed-spinodoids

Data and Code underlying publication: Experiment-informed finite-strain inverse design of spinodal metamaterials

  • In situ characterization
  • Inverse design
  • Machine learning
  • + 2
  • Matlab
  • Other
  • Python
5
37

GSH is a MATLAB package to do Global Spherical Harmonic Analyses (GSHA) and Synthesis (GSHS) for Crust1.0.

GSH is a MATLAB package to do Global Spherical Harmonic Analyses (GSHA) and Synthesis (GSHS) for Crust1.0.

  • Geophysics.
  • gravity
  • Spherical Harmonics Analysis
1
36

AHN2 pointcloud viewer

A web application able to visualize the AHN2 point cloud data of the Netherlands.

  • Big data
  • Real time data analysis
  • Visualization
  • CSS
  • Dockerfile
  • HTML
  • + 1
3
35

argopy

Argopy is a python library dedicated to Argo data access, manipulation and visualisation for standard users as well as Argo experts.

  • Data Analysis
  • Data processing
  • Earth and Environmental Sciences
  • + 3
  • CSS
  • Dockerfile
  • Python
  • + 1
2
35

HyperCanny

Finds edges in high-dimensional data using the Canny algorithm.

  • Data Analysis
  • edge detection
  • High performance computing
  • C
  • C++
  • Makefile
  • + 3
1
35

Inseq

Interpretability for sequence generation models 🐛 🔍

  • deep learning
  • Explainable AI
  • generative models
  • + 2
  • Dockerfile
  • Makefile
  • Python
0
35

AHN point cloud viewer web service

A web service to serve large point cloud data efficiently using octrees.

  • Big data
  • Visualization
  • Java
  • Python
2
34

Source code of the SWAN model: Free Infragravity Waves in the North Sea

Source code of the SWAN model: Free Infragravity Waves in the North Sea

  • coastal waters
  • Infragravity waves
  • inland waters
  • + 3
3
33

eAC_charging_infra_optimization

Code underlying the publication: Optimizing the battery charging and swapping infrastructure for electric short-haul aircraft—The case of electric flight in Norway

  • Battery swapping systems
  • Commuter air transport
  • Electric aviation
  • + 3
  • Markdown
  • Other
  • Python
1
32

Numerical and analytical model for Taylor flow in tubular CO2 electrolyser

Numerical and analytical model for Taylor flow in tubular CO2 electrolyser

  • COMSOL
  • gas-liquid Taylor flow
  • MATLAB
  • + 1
4
31

Code supporting the publication: Going in style: Audio backdoors through stylistic transformations.

Code supporting the publication: Going in style: Audio backdoors through stylistic transformations.

  • backdoor attack
  • deep learning
  • Google Speech Commands
  • + 4
  • Other
  • Python
  • Shell
2
30

mpcrl-greenhouse

Software underlying publication: Reinforcement learning-based model predictive control for greenhouse climate control

  • Agriculture
  • Greenhouse climate control
  • Model predictive control
  • + 1
  • Markdown
  • Other
  • Python
2
30

swyft

swyft is the official implementation of Truncated Marginal Neural Ratio Estimation, a hyper-efficient, simulation-based inference technique for complex data and expensive simulators.

  • Bayesian Inference
  • Data Analysis
  • Jupyter Notebook
  • Python
5
30

Syndat

Syndat is a python package that provides functionalities for the evaluation and visualization of synthetic data.

  • Clinical Data
  • data privacy
  • Data Quality
  • + 3
  • Python
4
30

Syndat Dashboard

A Dashboard for evaluation & visualization of synthetic patient level data.

  • data fidelity
  • data privacy
  • Interactive Dashboard
  • + 1
  • CSS
  • Dockerfile
  • HTML
  • + 3
2
30

Fit a double logistic function to a Sentinel-2 vegetation index (VI) time series

Fit a double logistic function to a Sentinel-2 vegetation index (VI) time series

  • double logistic function
  • local and global functions
  • Time Series
  • + 1
1
29

Imitation learning model and datasets: "A Study of Learning Search Approximation in Mixed Integer Branch and Bound: Node Selection in SCIP"

Imitation learning model and datasets: "A Study of Learning Search Approximation in Mixed Integer Branch and Bound: Node Selection in SCIP"

  • branch-and-bound
  • imitation learning
  • MIP
  • + 3
2
29

Retrieving multi-temporal max/min temperature of target area into a csv file

Retrieving multi-temporal max/min temperature of target area into a csv file

  • csv output
  • grid
  • minimum and maximum temperature
  • + 2
1
29

DoE2Vec

DoE2Vec is a self-supervised approach to learn exploratory landscape analysis features from design of experiments. The model can be used for downstream meta-learning tasks such as learninig which optimizer works best on a given optimization landscape.

  • Machine learning
  • optimization
  • python
  • Makefile
  • Python
  • R
1
29

Basic code for simulations of reduced Gilad model

Basic code for simulations of reduced Gilad model

  • dynamical systems
  • matlab code
  • pattern formation
  • + 2
1
28

Code underlying the publication: Forecasting estuarine salt intrusion in the Rhine-Meuse delta using an LSTM model

Code underlying the publication: Forecasting estuarine salt intrusion in the Rhine-Meuse delta using an LSTM model

  • chloride
  • Delta
  • estuary
  • + 7
4
28

AMBER

A real-time pipeline to search for Fast Radio Bursts and other transient radio sources.

  • Big data
  • GPU
  • High performance computing
  • + 1
  • C++
  • CMake
3
28

APE

A CLI, Java API and RESTful API for the automated generation of computational pipelines (scientific workflows) from large collections of computational tools.

  • Java
  • Program synthesis
  • Workflow technologies
  • ANTLR
  • Common Workflow Language
  • Java
5
27

MUSCLE3

MUSCLE3 is a coupling library for building multiscale simulations out of single-scale models.

  • High performance computing
  • Multi-scale & multi model simulations
  • C
  • C++
  • Dockerfile
  • + 4
4
27

OMUSE

A Python environment to interface and couple oceanographic and other earth system model codes.

  • High performance computing
  • Multi-scale & multi model simulations
  • Batchfile
  • C
  • C++
  • + 10
8
27

Data underlying the publication/thesis chapter: FlexConv: Continuous Kernel Convolutions with Differentiable Kernel Sizes

Data underlying the publication/thesis chapter: FlexConv: Continuous Kernel Convolutions with Differentiable Kernel Sizes

  • computer vision
  • Convolutional Neural Network
  • kernel size
  • + 2
  • Jupyter Notebook
  • Markdown
  • Other
  • + 2
6
26