All software
LitStudy
Explore scientific literature using Python from the comfort of a Jupyter notebook
- Inter-operability & linked data
- Text analysis & natural language processing
- Visualization
- Python
- HTML
Fit a double logistic function to a Sentinel-2 vegetation index (VI) time series
Fit a double logistic function to a Sentinel-2 vegetation index (VI) time series
- double logistic function
- local and global functions
- Time Series
- + 1
Retrieving multi-temporal max/min temperature of target area into a csv file
Retrieving multi-temporal max/min temperature of target area into a csv file
- csv output
- grid
- minimum and maximum temperature
- + 2
BIAS
A toolbox for detecting structural bias in continuous optimization heuristics.
- Bias
- Metaheuristics
- optimization
- + 1
- Jupyter Notebook
- Python
- Dockerfile
- + 1
Code and secondary data of analysis on pesticide transport during rainfall runoff events
Code and secondary data of analysis on pesticide transport during rainfall runoff events
- erosion
- particulate phase
- Pesticides
- + 3
Supplementary Materials: When is variable importance estimation in species distribution modelling affected by spatial correlation?
Supplementary Materials: When is variable importance estimation in species distribution modelling affected by spatial correlation?
- empirical modelling
- niche models
- raster
- + 8
HyperCanny
Finds edges in high-dimensional data using the Canny algorithm.
- Data Analysis
- edge detection
- High performance computing
- C++
- C
- Python
- + 3
simplicial_convolutions
Code underlying: Simplicial Convolutional Filters
- convolution
- neural networks
- simplicial complex
- Other
- Matlab
- Markdown
- + 1
talkr
{talkr} is an R package that offers a set of convenience functions for quality control, visualisation and analysis of conversational data. Most notably it provides a range of plotting functions that play well with ggplot and the tidyverse.
- conversation
- talk
- turn-taking
- + 1
- R
- Rez
AHN2 pointcloud viewer
A web application able to visualize the AHN2 point cloud data of the Netherlands.
- Big data
- Real time data analysis
- Visualization
- JavaScript
- HTML
- CSS
- + 1
OMUSE
A Python environment to interface and couple oceanographic and other earth system model codes.
- High performance computing
- Multi-scale & multi model simulations
- Fortran
- Python
- HTML
- + 10
AHN point cloud viewer web service
A web service to serve large point cloud data efficiently using octrees.
- Big data
- Visualization
- Java
- Python
AMBER
A real-time pipeline to search for Fast Radio Bursts and other transient radio sources.
- Big data
- GPU
- High performance computing
- + 1
- C++
- CMake
APE
A CLI, Java API and RESTful API for the automated generation of computational pipelines (scientific workflows) from large collections of computational tools.
- Java
- Program synthesis
- Workflow technologies
- Java
- Common Workflow Language
- ANTLR
swyft
swyft is the official implementation of Truncated Marginal Neural Ratio Estimation, a hyper-efficient, simulation-based inference technique for complex data and expensive simulators.
- Bayesian Inference
- Data Analysis
- Jupyter Notebook
- Python
laserchicken
Toolkit for preprocessing and feature calculation of point clouds created using airborne laser scanning
- Big data
- Machine learning
- Python
- Jupyter Notebook
Basic code for simulations of reduced Gilad model
Basic code for simulations of reduced Gilad model
- dynamical systems
- matlab code
- pattern formation
- + 2
GreenspaceAccessibility (Github) code repository: spatial analysis underlying the journal paper "Measuring children's and adolescents' accessibility to greenspaces from different locations and commuting settings"
GreenspaceAccessibility (Github) code repository: spatial analysis underlying the journal paper "Measuring children's and adolescents' accessibility to greenspaces from different locations and commuting settings"
- Activity setting
- Betweenness
- Exposure
- + 3
Imitation learning model and datasets: "A Study of Learning Search Approximation in Mixed Integer Branch and Bound: Node Selection in SCIP"
Imitation learning model and datasets: "A Study of Learning Search Approximation in Mixed Integer Branch and Bound: Node Selection in SCIP"
- branch-and-bound
- imitation learning
- MIP
- + 3
Inseq
Interpretability for sequence generation models 🐛 🔍
- deep learning
- Explainable AI
- generative models
- + 2
- Python
- Makefile
- Dockerfile
argopy
Argopy is a python library dedicated to Argo data access, manipulation and visualisation for standard users as well as Argo experts.
- Data Analysis
- Data processing
- Earth and Environmental Sciences
- + 3
- Python
- CSS
- Shell
- + 1
MUSCLE3
MUSCLE3 is a coupling library for building multiscale simulations out of single-scale models.
- High performance computing
- Multi-scale & multi model simulations
- Fortran
- C++
- Python
- + 4
PyBanshee, Python-based open source of the MATLAB toolbox BANSHEE.
PyBanshee, Python-based open source of the MATLAB toolbox BANSHEE.
- Bayesian network models
- Gaussian copula
- Python package
Citation File Format
The Citation File Format lets you provide citation metadata for software or datasets in plaintext files that are easy to read by both humans and machines.
- FAIR
- Inter-operability & linked data
- Python
DIANNA
Deep Insight And Neural Network Analysis, DIANNA is the only Explainable AI, XAI library for scientists supporting Open Neural Network Exchange, ONNX - the de facto standard models format.
- Explainable AI
- Image processing
- Machine learning
- + 2
- Jupyter Notebook
- Python
- TeX
Arena-Crowds
Arena-Crowds is Python scripts for the data analysis to estimate crowd density based on WiFi positioning.
- Computer networks
- Networks
- Network Science
- Jupyter Notebook
- Python
DeepRank2
DeepRank2 is an open-source deep learning framework for data mining of protein-protein interfaces or single-residue missense variants. This package is an improved and unified version of three previously developed packages: DeepRank, DeepRank-GNN and DeepRank-Mut.
- Cancer vaccine
- Convolutional Neural Network
- Deep Learning Framework
- + 5
- Python
- Jupyter Notebook
- TeX
- + 1
QTLTableMiner++
Extract gene-trait associations from scientific literature
- Inter-operability & linked data
- Text analysis & natural language processing
- Java
- Shell
Code underlying the publication: Integrity-based Explanations for Fostering Appropriate Trust in AI Agents
Code underlying the publication: Integrity-based Explanations for Fostering Appropriate Trust in AI Agents
- AI agent
- appropriate trust
- explanations
- + 1
Cross-Domain Classification of Moral Values - code
Cross-Domain Classification of Moral Values - code
- Cross-domain
- Ethics
- Morality
- + 3
- Python
- Other
- Markdown
Matlab code for Full Range Adaptive Cruise Control with Integrated Collision Avoidance Strategy
Matlab code for Full Range Adaptive Cruise Control with Integrated Collision Avoidance Strategy
- Adaptive Cruise Control
- collision avoidance algorithm
- Full speed range ACC
- + 2
MATLAB model of multiscale model for CO2 electrolysis
MATLAB model of multiscale model for CO2 electrolysis
- CO2 electrolysis
- Multiscale model
- Techno-economic analysis
Data and Optimisation model for space heating and committed emissions for the built environment
Data and Optimisation model for space heating and committed emissions for the built environment
- Carbon lock-in
- Committed carbon emissions
- Electrification of heating
- + 4
Case Law App
Web application for exploring the citation network of Dutch court decisions.
- Text analysis & natural language processing
- Visualization
- JavaScript
- CSS
- HTML
Foot Progression Angle Estimation
Use a single Accelerometer and Gyroscope on the foot to determine foot progression angle during walking.
- FPA
- IMU
- Single sensor
- MATLAB
StoryTeller
StoryTeller is a web application for visual analysis of textual data which can show you the connections between storylines, participants and other entities in complex humanities data.
- Visualization
- JavaScript
- HTML
- CSS
Model for the dynamic behaviour in magnetic nanoparticles: scripts and experimental data
Model for the dynamic behaviour in magnetic nanoparticles: scripts and experimental data
- Anisotropy
- Brownian relaxation
- Fokker-Planck equation
- + 5
trip-planning
Code underlying the publication: Dealing with Uncertainty: Understanding the Impact of Prognostic Versus Diagnostic Tasks on Trust and Reliance in Human-AI Decision Making
- Diagnostic
- Empirical Studies
- Human-AI Decision-Making
- + 6
- Other
- JSON
- Python
- + 3
Measurements.jl
Error propagation calculator and library for physical measurements. It supports real and complex numbers with uncertainty, arbitrary precision calculations, operations with arrays, and numerical integration.
- error propagation
- Julia Package
- Physics
- + 1
- Julia
Code accompanying the paper "Modeling the effect of prior austenite grain size on bainite formation kinetics."
Code accompanying the paper "Modeling the effect of prior austenite grain size on bainite formation kinetics."
- Bainite
- Grain size
- Nucleation
- + 2
Software related to "Impact of optical aberrations on axial position determination by photometry"
Software related to "Impact of optical aberrations on axial position determination by photometry"
- Axial position
- Gaussian fitting
- Optical aberrations
- + 6
Dive
Interactively explore millions of 2D and 3D data points in your browser, without the need to install anything.
- Big data
- Machine learning
- Visualization
- HTML
- JavaScript
- CSS
- + 1
DoE2Vec
DoE2Vec is a self-supervised approach to learn exploratory landscape analysis features from design of experiments. The model can be used for downstream meta-learning tasks such as learninig which optimizer works best on a given optimization landscape.
- Machine learning
- optimization
- python
- Python
- R
- Makefile
pbg-ld
Access integrated data on genes and associated traits in plants
- Data Analysis
- genomics
- Inter-operability & linked data
- PLpgSQL
- Shell
- Python
- + 2
etv_routing_assignment
Code underlying the publication: Dispatching a fleet of electric towing vehicles for aircraft taxiing with conflict avoidance and efficient battery charging
- Electric aircraft taxiing
- Electric towing vehicles
- Partial battery recharging
- + 2
- Python
- Markdown
citation.js
Citation.js converts formats like BibTeX, Wikidata JSON and BibJSON to CSL-JSON to convert to other formats like APA, Vancouver, RIS and back to BibTeX.
- Bibliography
- BibTeX
- Data Citation
- + 2
- JavaScript
- TeX
- Roff
SLEPLET
SLEPLET is a Python package for the construction of Slepian wavelets in the spherical and manifold (via meshes) settings.
- manifolds
- python
- slepian functions
- + 2
- Python
- TeX
Code supporting the publication: Gromit: Benchmarking the performance and scalability of blockchain systems
Code supporting the publication: Gromit: Benchmarking the performance and scalability of blockchain systems
- Benchmarking
- Blockchain
- Performance
- + 1
- Other
- Python
- JSON
- + 3