All software
HyperCanny
Finds edges in high-dimensional data using the Canny algorithm.
- Data Analysis
- edge detection
- High performance computing
- C++
- C
- Python
- + 3
LitStudy
Explore scientific literature using Python from the comfort of a Jupyter notebook
- Inter-operability & linked data
- Text analysis & natural language processing
- Visualization
- Python
- HTML
simplicial_convolutions
Code underlying: Simplicial Convolutional Filters
- convolution
- neural networks
- simplicial complex
- Other
- Matlab
- Markdown
- + 1
AHN2 pointcloud viewer
A web application able to visualize the AHN2 point cloud data of the Netherlands.
- Big data
- Real time data analysis
- Visualization
- JavaScript
- HTML
- CSS
- + 1
AMBER
A real-time pipeline to search for Fast Radio Bursts and other transient radio sources.
- Big data
- GPU
- High performance computing
- + 1
- C++
- CMake
APE
A CLI, Java API and RESTful API for the automated generation of computational pipelines (scientific workflows) from large collections of computational tools.
- Java
- Program synthesis
- Workflow technologies
- Java
- ANTLR
BIAS
A toolbox for detecting structural bias in continuous optimization heuristics.
- Bias
- Metaheuristics
- optimization
- + 1
- Jupyter Notebook
- Python
- Dockerfile
- + 1
AHN point cloud viewer web service
A web service to serve large point cloud data efficiently using octrees.
- Big data
- Visualization
- Java
- Python
OMUSE
A Python environment to interface and couple oceanographic and other earth system model codes.
- High performance computing
- Multi-scale & multi model simulations
- Fortran
- Python
- HTML
- + 10
Inseq
Interpretability for sequence generation models 🐛 🔍
- deep learning
- Explainable AI
- generative models
- + 2
- Python
- Makefile
- Dockerfile
laserchicken
Toolkit for preprocessing and feature calculation of point clouds created using airborne laser scanning
- Big data
- Machine learning
- Python
- Jupyter Notebook
swyft
swyft is the official implementation of Truncated Marginal Neural Ratio Estimation, a hyper-efficient, simulation-based inference technique for complex data and expensive simulators.
- Bayesian Inference
- Data Analysis
- Jupyter Notebook
- Python
MUSCLE3
MUSCLE3 is a coupling library for building multiscale simulations out of single-scale models.
- High performance computing
- Multi-scale & multi model simulations
- Fortran
- C++
- Python
- + 4
talkr
{talkr} is an R package that offers a set of convenience functions for quality control, visualisation and analysis of conversational data. Most notably it provides a range of plotting functions that play well with ggplot and the tidyverse.
- conversation
- talk
- turn-taking
- + 1
- R
- Rez
Basic code for simulations of reduced Gilad model
Basic code for simulations of reduced Gilad model
- dynamical systems
- matlab code
- pattern formation
- + 2
GreenspaceAccessibility (Github) code repository: spatial analysis underlying the journal paper "Measuring children's and adolescents' accessibility to greenspaces from different locations and commuting settings"
GreenspaceAccessibility (Github) code repository: spatial analysis underlying the journal paper "Measuring children's and adolescents' accessibility to greenspaces from different locations and commuting settings"
- Activity setting
- Betweenness
- Exposure
- + 3
GreenspacePerception (Github) code repository: analysis underlying the publication "How well do NDVI and OpenStreetMap data capture people’s visual perceptions of urban greenspace?"
GreenspacePerception (Github) code repository: analysis underlying the publication "How well do NDVI and OpenStreetMap data capture people’s visual perceptions of urban greenspace?"
- Crowdsourcing
- NDVI
- OpenStreetMap
- + 2
Imitation learning model and datasets: "A Study of Learning Search Approximation in Mixed Integer Branch and Bound: Node Selection in SCIP"
Imitation learning model and datasets: "A Study of Learning Search Approximation in Mixed Integer Branch and Bound: Node Selection in SCIP"
- branch-and-bound
- imitation learning
- MIP
- + 3
Citation File Format
The Citation File Format lets you provide citation metadata for software or datasets in plaintext files that are easy to read by both humans and machines.
- FAIR
- Inter-operability & linked data
- Python
DIANNA
Deep Insight And Neural Network Analysis, DIANNA is the only Explainable AI, XAI library for scientists supporting Open Neural Network Exchange, ONNX - the de facto standard models format.
- Explainable AI
- Image processing
- Machine learning
- + 2
- Jupyter Notebook
- Python
- TeX
Code and secondary data of analysis on pesticide transport during rainfall runoff events
Code and secondary data of analysis on pesticide transport during rainfall runoff events
- erosion
- particulate phase
- Pesticides
- + 3
QTLTableMiner++
Extract gene-trait associations from scientific literature
- Inter-operability & linked data
- Text analysis & natural language processing
- Java
- Shell
Cross-Domain Classification of Moral Values - code
Cross-Domain Classification of Moral Values - code
- Cross-domain
- Ethics
- Morality
- + 3
- Python
- Other
- Markdown
Matlab code for Full Range Adaptive Cruise Control with Integrated Collision Avoidance Strategy
Matlab code for Full Range Adaptive Cruise Control with Integrated Collision Avoidance Strategy
- Adaptive Cruise Control
- collision avoidance algorithm
- Full speed range ACC
- + 2
MATLAB model of multiscale model for CO2 electrolysis
MATLAB model of multiscale model for CO2 electrolysis
- CO2 electrolysis
- Multiscale model
- Techno-economic analysis
Arena-Crowds
Arena-Crowds is Python scripts for the data analysis to estimate crowd density based on WiFi positioning.
- Computer networks
- Networks
- Network Science
- Jupyter Notebook
- Python
Case Law App
Web application for exploring the citation network of Dutch court decisions.
- Text analysis & natural language processing
- Visualization
- JavaScript
- CSS
- HTML
DeepRank2
DeepRank2 is an open-source deep learning framework for data mining of protein-protein interfaces or single-residue missense variants. This package is an improved and unified version of three previously developed packages: DeepRank, DeepRank-GNN and DeepRank-Mut.
- Cancer vaccine
- Convolutional Neural Network
- Deep Learning Framework
- + 5
- Python
- Jupyter Notebook
- TeX
- + 1
StoryTeller
StoryTeller is a web application for visual analysis of textual data which can show you the connections between storylines, participants and other entities in complex humanities data.
- Visualization
- JavaScript
- HTML
- CSS
Model for the dynamic behaviour in magnetic nanoparticles: scripts and experimental data
Model for the dynamic behaviour in magnetic nanoparticles: scripts and experimental data
- Anisotropy
- Brownian relaxation
- Fokker-Planck equation
- + 5
Measurements.jl
Error propagation calculator and library for physical measurements. It supports real and complex numbers with uncertainty, arbitrary precision calculations, operations with arrays, and numerical integration.
- error propagation
- Julia Package
- Physics
- + 1
- Julia
Code underlying the publication: Integrity-based Explanations for Fostering Appropriate Trust in AI Agents
Code underlying the publication: Integrity-based Explanations for Fostering Appropriate Trust in AI Agents
- AI agent
- appropriate trust
- explanations
- + 1
Dive
Interactively explore millions of 2D and 3D data points in your browser, without the need to install anything.
- Big data
- Machine learning
- Visualization
- HTML
- JavaScript
- CSS
- + 1
Foot Progression Angle Estimation
Use a single Accelerometer and Gyroscope on the foot to determine foot progression angle during walking.
- FPA
- IMU
- Single sensor
- MATLAB
pbg-ld
Access integrated data on genes and associated traits in plants
- Data Analysis
- genomics
- Inter-operability & linked data
- PLpgSQL
- Shell
- Python
- + 2
Data and Optimisation model for space heating and committed emissions for the built environment
Data and Optimisation model for space heating and committed emissions for the built environment
- Carbon lock-in
- Committed carbon emissions
- Electrification of heating
- + 4
Software related to "Impact of optical aberrations on axial position determination by photometry"
Software related to "Impact of optical aberrations on axial position determination by photometry"
- Axial position
- Gaussian fitting
- Optical aberrations
- + 6
argopy
Argopy is a python library dedicated to Argo data access, manipulation and visualisation for standard users as well as Argo experts.
- Data Analysis
- Data processing
- Earth and Environmental Sciences
- + 3
- Python
- CSS
- Shell
- + 1
SLEPLET
SLEPLET is a Python package for the construction of Slepian wavelets in the spherical and manifold (via meshes) settings.
- manifolds
- python
- slepian functions
- + 2
- Python
- TeX
Machine learning-based classification model corresponding to the paper 'Machine learning to improve orientation estimation in sports situations challenging for inertial sensor use'
Machine learning-based classification model corresponding to the paper 'Machine learning to improve orientation estimation in sports situations challenging for inertial sensor use'
- Inertial Measurement Unit
- kinematics
- Machine learning
- + 3
PyBanshee, Python-based open source of the MATLAB toolbox BANSHEE.
PyBanshee, Python-based open source of the MATLAB toolbox BANSHEE.
- Bayesian network models
- Gaussian copula
- Python package
trip-planning
Code underlying the publication: Dealing with Uncertainty: Understanding the Impact of Prognostic Versus Diagnostic Tasks on Trust and Reliance in Human-AI Decision Making
- Diagnostic
- Empirical Studies
- Human-AI Decision-Making
- + 6
- Other
- JSON
- Python
- + 3
Texcavator
Texcavator is a search engine and text mining application for creating word cloud and time line visualizations of large text corpora.
- Text analysis & natural language processing
- Visualization
- JavaScript
- Python
- HTML
- + 1
etv_routing_assignment
Code underlying the publication: Dispatching a fleet of electric towing vehicles for aircraft taxiing with conflict avoidance and efficient battery charging
- Electric aircraft taxiing
- Electric towing vehicles
- Partial battery recharging
- + 2
- Python
- Markdown
Numerical and analytical model for Taylor flow in tubular CO2 electrolyser
Numerical and analytical model for Taylor flow in tubular CO2 electrolyser
- COMSOL
- gas-liquid Taylor flow
- MATLAB
- + 1
Software package C1 belonging to the paper: Cold pool dynamics shape the response of extreme rainfall events to climate change
Software package C1 belonging to the paper: Cold pool dynamics shape the response of extreme rainfall events to climate change
- iterative rain cell tracking
- precipitation patterns
- rainfall intensity
COVID-19 Integrated Surveillance Data in Italy
COVID-19 integrated surveillance data provided by the Italian National Institute of Health and processed via UnrollingAverages.jl to deconvolve the weekly simple moving averages.
- Clinical Data
- Computational Epidemiology
- COVID-19
- + 16
- Julia
- TeX
- Python
DoE2Vec
DoE2Vec is a self-supervised approach to learn exploratory landscape analysis features from design of experiments. The model can be used for downstream meta-learning tasks such as learninig which optimizer works best on a given optimization landscape.
- Machine learning
- optimization
- python
- Python
- R
- Makefile