Skip to main content
Ctrl K

All software

1289 software items. Page 3 of 27. 48 items per page.
97-144 of 1289

KNIME ss-TEA node

A node for the KNIME workflow systems that allows you to identify which residue position in a big protein sequence alignment is specific to ligand binding.

  • Workflow technologies
  • (Java)
1
39

sv-callers

Highly portable parallel workflow to detect structural variants in cancer genomes.

  • Big data
  • High performance computing
  • Workflow technologies
  • (Python)
  • (Shell)
4
39

Data and software supporting the publication "Telecom-band quantum interference of frequency-converted photons from remote detuned NV centers"

Data and software supporting the publication "Telecom-band quantum interference of frequency-converted photons from remote detuned NV centers"

  • Quantum Frequency Conversion
  • quantum networks
  • Telecom wavelength
  • + 1
4
38

Software accompanying manuscript "Annual Satellite-Based NDVI-Derived Land Cover of Europe for 2001-2019"

Software accompanying manuscript "Annual Satellite-Based NDVI-Derived Land Cover of Europe for 2001-2019"

  • Classification trees
  • CORINE
  • Europe
  • + 3
2
38

Supplementary materials for the article: Towards future pedestrian-vehicle interactions: Introducing theoretically-supported AR prototypes.

Supplementary materials for the article: Towards future pedestrian-vehicle interactions: Introducing theoretically-supported AR prototypes.

  • Augmented Reality
  • Automated vehicles
  • autonomous vehicles
  • + 3
5
38

simplicial_convolutions

Code underlying: Simplicial Convolutional Filters

  • convolution
  • neural networks
  • simplicial complex
  • (large-text-file)
  • (Markdown)
  • (Matlab)
  • + 1
1
37

Code supporting the publication: Can you hear it? backdoor attacks via ultrasonic triggers.

Code supporting the publication: Can you hear it? backdoor attacks via ultrasonic triggers.

  • backdoor attack
  • deep learning
  • Inaudible trigger
  • + 3
  • (Other)
  • (Python)
  • (Shell)
1
36

MATLAB model of multiscale model for CO2 electrolysis

MATLAB model of multiscale model for CO2 electrolysis

  • CO2 electrolysis
  • Multiscale model
  • Techno-economic analysis
5
36

Supplementary Materials: When is variable importance estimation in species distribution modelling affected by spatial correlation?

Supplementary Materials: When is variable importance estimation in species distribution modelling affected by spatial correlation?

  • empirical modelling
  • niche models
  • raster
  • + 8
4
35

AHN2 pointcloud viewer

A web application able to visualize the AHN2 point cloud data of the Netherlands.

  • Big data
  • Real time data analysis
  • Visualization
  • (CSS)
  • (Dockerfile)
  • (HTML)
  • + 1
3
35

GSH is a MATLAB package to do Global Spherical Harmonic Analyses (GSHA) and Synthesis (GSHS) for Crust1.0.

GSH is a MATLAB package to do Global Spherical Harmonic Analyses (GSHA) and Synthesis (GSHS) for Crust1.0.

  • Geophysics.
  • gravity
  • Spherical Harmonics Analysis
1
34

trip-planning

Code underlying the publication: Dealing with Uncertainty: Understanding the Impact of Prognostic Versus Diagnostic Tasks on Trust and Reliance in Human-AI Decision Making

  • Diagnostic
  • Empirical Studies
  • Human-AI Decision-Making
  • + 6
  • (CSS)
  • (HTML)
  • (JavaScript)
  • + 3
3
34

AHN point cloud viewer web service

A web service to serve large point cloud data efficiently using octrees.

  • Big data
  • Visualization
  • (Java)
  • (Python)
2
34

HyperCanny

Finds edges in high-dimensional data using the Canny algorithm.

  • Data Analysis
  • edge detection
  • High performance computing
  • (C)
  • (C++)
  • (Makefile)
  • + 3
1
34

BIAS

A toolbox for detecting structural bias in continuous optimization heuristics.

  • Bias
  • Metaheuristics
  • optimization
  • + 1
  • (Dockerfile)
  • ("Jupyter Notebook")
  • (Python)
  • + 1
3
33

GreenspaceAccessibility (Github) code repository: spatial analysis underlying the journal paper "Measuring children's and adolescents' accessibility to greenspaces from different locations and commuting settings"

GreenspaceAccessibility (Github) code repository: spatial analysis underlying the journal paper "Measuring children's and adolescents' accessibility to greenspaces from different locations and commuting settings"

  • Activity setting
  • Betweenness
  • Exposure
  • + 3
2
32

talkr

{talkr} is an R package that offers a set of convenience functions for quality control, visualisation and analysis of conversational data. Most notably it provides a range of plotting functions that play well with ggplot and the tidyverse.

  • conversation
  • talk
  • turn-taking
  • + 1
  • (R)
  • (Rez)
4
32

InstaNovo

InstaNovo is a transformer neural network with the ability to translate fragment ion peaks into the sequence of amino acids that make up the studied peptide(s). InstaNovo+ is a multinomial diffusion model that further improves performance by iterative refinement of predicted sequences.

  • deep learning
  • Machine learning
  • mass spectrometry
  • + 1
  • (Makefile)
  • (Python)
5
31

Code accompanying the paper "Modeling the effect of prior austenite grain size on bainite formation kinetics."

Code accompanying the paper "Modeling the effect of prior austenite grain size on bainite formation kinetics."

  • Bainite
  • Grain size
  • Nucleation
  • + 2
3
30

argopy

Argopy is a python library dedicated to Argo data access, manipulation and visualisation for standard users as well as Argo experts.

  • Data Analysis
  • Data processing
  • Earth and Environmental Sciences
  • + 3
  • (CSS)
  • (Dockerfile)
  • (Python)
  • + 1
2
30

Fit a double logistic function to a Sentinel-2 vegetation index (VI) time series

Fit a double logistic function to a Sentinel-2 vegetation index (VI) time series

  • double logistic function
  • local and global functions
  • Time Series
  • + 1
1
29

Retrieving multi-temporal max/min temperature of target area into a csv file

Retrieving multi-temporal max/min temperature of target area into a csv file

  • csv output
  • grid
  • minimum and maximum temperature
  • + 2
1
29

Inseq

Interpretability for sequence generation models 🐛 🔍

  • deep learning
  • Explainable AI
  • generative models
  • + 2
  • (Dockerfile)
  • (Makefile)
  • (Python)
0
29

swyft

swyft is the official implementation of Truncated Marginal Neural Ratio Estimation, a hyper-efficient, simulation-based inference technique for complex data and expensive simulators.

  • Bayesian Inference
  • Data Analysis
  • ("Jupyter Notebook")
  • (Python)
5
29

Basic code for simulations of reduced Gilad model

Basic code for simulations of reduced Gilad model

  • dynamical systems
  • matlab code
  • pattern formation
  • + 2
1
28

Numerical and analytical model for Taylor flow in tubular CO2 electrolyser

Numerical and analytical model for Taylor flow in tubular CO2 electrolyser

  • COMSOL
  • gas-liquid Taylor flow
  • MATLAB
  • + 1
4
28

IUI2025_ConvXAI

User Interaction Dataset associated with IUI 2025 paper "Is Conversational XAI All You Need? Human-AI Decision Making With a Conversational XAI Assistant"

  • Appropriate Reliance
  • Conversational XAI Interface
  • Human-AI Decision Making
  • ("Jupyter Notebook")
  • (Markdown)
  • (Other)
  • + 1
3
27

AMBER

A real-time pipeline to search for Fast Radio Bursts and other transient radio sources.

  • Big data
  • GPU
  • High performance computing
  • + 1
  • (C++)
  • (CMake)
3
27

OMUSE

A Python environment to interface and couple oceanographic and other earth system model codes.

  • High performance computing
  • Multi-scale & multi model simulations
  • (Batchfile)
  • (C)
  • (C++)
  • + 10
8
27

Code supporting the publication: Going in style: Audio backdoors through stylistic transformations.

Code supporting the publication: Going in style: Audio backdoors through stylistic transformations.

  • backdoor attack
  • deep learning
  • Google Speech Commands
  • + 4
  • (Other)
  • (Python)
  • (Shell)
2
26

Data underlying the publication/thesis chapter: FlexConv: Continuous Kernel Convolutions with Differentiable Kernel Sizes

Data underlying the publication/thesis chapter: FlexConv: Continuous Kernel Convolutions with Differentiable Kernel Sizes

  • computer vision
  • Convolutional Neural Network
  • kernel size
  • + 2
  • ("Jupyter Notebook")
  • (Markdown)
  • (Other)
  • + 2
6
26

finite-strain-inverse-designed-spinodoids

Data and Code underlying publication: Experiment-informed finite-strain inverse design of spinodal metamaterials

  • In situ characterization
  • Inverse design
  • Machine learning
  • + 2
  • (Matlab)
  • (Other)
  • (Python)
5
26

Imitation learning model and datasets: "A Study of Learning Search Approximation in Mixed Integer Branch and Bound: Node Selection in SCIP"

Imitation learning model and datasets: "A Study of Learning Search Approximation in Mixed Integer Branch and Bound: Node Selection in SCIP"

  • branch-and-bound
  • imitation learning
  • MIP
  • + 3
2
26

laserchicken

Toolkit for preprocessing and feature calculation of point clouds created using airborne laser scanning

  • Big data
  • Machine learning
  • ("Jupyter Notebook")
  • (Python)
12
26

LinkAhead

Open Source Research Data Management Software

  • Data
  • Electronic Lab Notebook
  • ETL
  • + 9
  • (ANTLR)
  • (C++)
  • (CSS)
  • + 9
6
26

MUSCLE3

MUSCLE3 is a coupling library for building multiscale simulations out of single-scale models.

  • High performance computing
  • Multi-scale & multi model simulations
  • (C)
  • (C++)
  • (Dockerfile)
  • + 4
4
26

eAC_charging_infra_optimization

Code underlying the publication: Optimizing the battery charging and swapping infrastructure for electric short-haul aircraft—The case of electric flight in Norway

  • Battery swapping systems
  • Commuter air transport
  • Electric aviation
  • + 3
  • (Markdown)
  • (Other)
  • (Python)
1
25

APE

A CLI, Java API and RESTful API for the automated generation of computational pipelines (scientific workflows) from large collections of computational tools.

  • Java
  • Program synthesis
  • Workflow technologies
  • (ANTLR)
  • ("Common Workflow Language")
  • (Java)
5
25

DeepRank2

DeepRank2 is an open-source deep learning framework for data mining of protein-protein interfaces or single-residue missense variants. This package is an improved and unified version of three previously developed packages: DeepRank, DeepRank-GNN and DeepRank-Mut.

  • Cancer vaccine
  • Convolutional Neural Network
  • Deep Learning Framework
  • + 5
  • (Dockerfile)
  • ("Jupyter Notebook")
  • (Python)
  • + 1
12
25

PyBanshee, Python-based open source of the MATLAB toolbox BANSHEE.

PyBanshee, Python-based open source of the MATLAB toolbox BANSHEE.

  • Bayesian network models
  • Gaussian copula
  • Python package
6
24

Code underlying the publication: Forecasting estuarine salt intrusion in the Rhine-Meuse delta using an LSTM model

Code underlying the publication: Forecasting estuarine salt intrusion in the Rhine-Meuse delta using an LSTM model

  • chloride
  • Delta
  • estuary
  • + 7
4
23

Measurements.jl

Error propagation calculator and library for physical measurements. It supports real and complex numbers with uncertainty, arbitrary precision calculations, operations with arrays, and numerical integration.

  • error propagation
  • Julia Package
  • Physics
  • + 1
  • (Julia)
1
23

Cross-Domain Classification of Moral Values - code

Cross-Domain Classification of Moral Values - code

  • Cross-domain
  • Ethics
  • Morality
  • + 3
  • (Markdown)
  • (Other)
  • (Python)
5
22

Arena-Crowds

Arena-Crowds is Python scripts for the data analysis to estimate crowd density based on WiFi positioning.

  • Computer networks
  • Networks
  • Network Science
  • ("Jupyter Notebook")
  • (Python)
3
22

DIANNA

Deep Insight And Neural Network Analysis, DIANNA is the only Explainable AI, XAI library for scientists supporting Open Neural Network Exchange, ONNX - the de facto standard models format.

  • Explainable AI
  • Image processing
  • Machine learning
  • + 2
  • ("Jupyter Notebook")
  • (Python)
  • (TeX)
12
22

CIRRUS-HL-campaign-codes---Code-accompanying-dissertation

CIRRUS-HL campaign codes - Codes accompanying dissertation

  • Airborne measurements
  • Background aerosol
  • Backward trajectories
  • + 7
  • ("Jupyter Notebook")
  • (Markdown)
  • (Python)
  • + 1
4
21

Code supporting the publication: Gromit: Benchmarking the performance and scalability of blockchain systems

Code supporting the publication: Gromit: Benchmarking the performance and scalability of blockchain systems

  • Benchmarking
  • Blockchain
  • Performance
  • + 1
  • (JSON)
  • (Markdown)
  • (Other)
  • + 3
3
21

Model for the dynamic behaviour in magnetic nanoparticles: scripts and experimental data

Model for the dynamic behaviour in magnetic nanoparticles: scripts and experimental data

  • Anisotropy
  • Brownian relaxation
  • Fokker-Planck equation
  • + 5
1
21