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Logo for haddock3

haddock3

Haddock3 (High Ambiguity Driven protein-protein DOCKing) is a modular software for for the integrative modeling and refinement of biomolecular complexes.

  • biomolecular complexes
  • docking
  • energetics
  • + 4
  • Python
  • Fortran
  • C++
  • + 10
12
6017
Logo for COPASI

COPASI

COPASI is an open source software for simulation and analysis of biochemical networks and their dynamics. It provides simulations using ODEs, SDEs, or Gillespie's stochastic simulation algorithm, with optional discrete events. COPASI provides several analyses, optimization, and parameter estimation.

  • Dynamics
  • optimization
  • Parameter estimation
  • + 3
  • C++
  • Java
  • Fortran
  • + 17
12
2701
Logo for TOTEM_M

TOTEM_M

Code  underlying: Topology Optimization of Thermo-Electro-Mechanical elements (TOTEM)

  • Non-convexity
  • Power constraint
  • SIMP
  • + 3
  • Other
  • Matlab
  • HTML
  • + 2
1
2492
Logo for ASTRA Toolbox

ASTRA Toolbox

The ASTRA Toolbox is a Python and MATLAB library of flexible, high-performance GPU-accelerated primitives for 2D and 3D tomography.

  • CT
  • GPU
  • Image reconstruction
  • + 4
  • C++
  • Cuda
  • MATLAB
  • + 8
2
1387
Logo for EC-Earth

EC-Earth

A European community Earth-System Model

  • Climate change
  • Climate modeling
  • High performance computing
  • + 1
    63
    1108
    Logo for Parallel Ice Sheet Model (PISM)

    Parallel Ice Sheet Model (PISM)

    An open-source modelling framework for ice sheets and glaciers

    • C++
    • geophysics
    • Glacier
    • + 5
    • C++
    • Python
    • TeX
    • + 9
    33
    878
    Logo for Chemistry Development Kit

    Chemistry Development Kit

    Open Source cheminformatics library.

    • Cheminformatics
    • Chemistry
    • Computational Chemistry
    • Java
    • Pawn
    • HTML
    5
    820
    Logo for GGIR

    GGIR

    Converts raw data from wearables into insightful reports for researchers investigating human daily physical activity and sleep.

    • Big data
    • R
    7
    747
    Logo for DUNE (Distributed and Unified Numerics Environment)

    DUNE (Distributed and Unified Numerics Environment)

    DUNE, the Distributed and Unified Numerics Environment, is a modular toolbox for solving partial differential equations (PDEs) with grid-based methods. It supports the easy, flexible, and efficient implementation of finite element and volume methods. DUNE is C++ code and also has a Python interface.

    • C++
    • Grid-based PDE methods
    • High performance computing
    • + 5
    • C++
    • CMake
    • Python
    • + 2
    13
    550
    Logo for DuMux

    DuMux

    DuMux - DUNE for Multi-{Phase, Component, Scale, Physics, …} flow and transport in porous media and more. The swiss army knife of porous media research. Open-source simulator in modern C++.

    • Earth and Environmental Sciences
    • Engineering
    • Finite volume method
    • + 9
    • C++
    • CMake
    • Hack
    • + 2
    21
    416
    Logo for ESMValTool

    ESMValTool

    The Earth System Model eValuation Tool is a community diagnostics and performance metrics tool for the evaluation of Earth System Models that allows for routine comparison of models and observations.

    • Big data
    • Optimized data handling
    • Visualization
    • + 1
    • NCL
    • Python
    • R
    • + 7
    96
    391
    Logo for AMUSE

    AMUSE

    Combine existing numerical codes in an easy to use Python framework. With AMUSE you can simulate objects such as star clusters, proto-planetary disks and galaxies.

    • High performance computing
    • Multi-scale & multi model simulations
    • Workflow technologies
    • C
    • Fortran
    • Python
    • + 26
    6
    282