FAIR Data Point
FA
RESTful web service that enables data owners to expose their data sets using rich machine-readable metadata.
Updated 29 months ago
107 6
Get started
35 commitsLast commit ≈ 12 months ago2 stars5 forks
Ctrl K
pbg-ld
Access integrated data on genes and associated traits in plants
16
mentions
4
contributors
Cite this software
What pbg-ld can do for you
- provides an integrated genetic resource on potato and (wild) tomato species for plant researchers and breeders
- enables queries for genomic regions or genes associated with traits of interest (QTLs)
- biological concepts and their relationships are described by (domain-specific) ontologies and controlled vocabularies
Keywords
Programming languages
License
</>Source code
Participating organisations
Reference papers
Mentions
Flavour your linked data with garlic
Author(s): Carlos Martinez-Ortiz
Published in 2018
Book section
2- 1.Author(s): Sylvie Marhadour, Charlotte ProdhommePublished in Potato Production Worldwide by Elsevier in 2023, page: 273-30110.1016/b978-0-12-822925-5.00021-9
- 2.Author(s): Ciro Gianmaria Amoroso, Dilip R. Panthee, Giuseppe Andolfo, Felipe Palau Ramìrez, Maria Raffaella ErcolanoPublished in Genomic Designing for Biotic Stress Resistant Vegetable Crops by Springer International Publishing in 2022, page: 1-3510.1007/978-3-030-97785-6_1
Dataset
2Journal articles
4- 1.Author(s): Senthil Kumar Narayanasamy, Kathiravan Srinivasan, Yuh-Chung Hu, Satish Kumar Masilamani, Kuo-Yi HuangPublished in Electronics by MDPI AG in 2022, page: 45310.3390/electronics11030453
- 2.Author(s): K. Joeri van der Velde, Gurnoor Singh, Rajaram Kaliyaperumal, XiaoFeng Liao, Sander de Ridder, Susanne Rebers, Hindrik H. D. Kerstens, Fernanda de Andrade, Jeroen van Reeuwijk, Fini E. De Gruyter, Saskia Hiltemann, Maarten Ligtvoet, Marjan M. Weiss, Hanneke W. M. van Deutekom, Anne M. L. Jansen, Andrew P. Stubbs, Lisenka E. L. M. Vissers, Jeroen F. J. Laros, Esther van Enckevort, Daphne Stemkens, Peter A. C. ‘t Hoen, Jeroen A. M. Beliën, Mariëlle E. van Gijn, Morris A. SwertzPublished in Scientific Data by Springer Science and Business Media LLC in 202210.1038/s41597-022-01265-x
- 3.Author(s): Albert Meroño-Peñuela, Pasquale Lisena, Carlos MartÍnez-OrtizPublished in Synthesis Lectures on Data, Semantics, and Knowledge by Springer Science and Business Media LLC in 2021, page: 1-11810.2200/s01114ed1v01y202107dsk021
- 4.Author(s): Gurnoor Singh, Arnold Kuzniar, Matthijs Brouwer, Carlos Martinez-Ortiz, Christian W. B. Bachem, Yury M. Tikunov, Arnaud G. Bovy, Richard G. F. Visser and Richard FinkersPublished in Applied Sciences by MDPI AG in 2020, page: 681310.3390/app10196813
Presentations
2Contributors
Contact person
Netherlands eScience Center
Arnold Kuzniar
Netherlands eScience Center
Gurnoor Singh
Wageningen University & Research
Related projects
candYgene
Prediction of candidate genes for traits using interoperable genome annotations
Updated 19 months ago
Finished
ODEX4all
Open discovery and exchange for all
Updated 20 months ago
Finished
Related software
grlc
GR
Builds a web API from SPARQL queries hosted on GitHub to accessing triple store data.
Updated 14 months ago
77 3
QTLTableMiner++
QT
Extract gene-trait associations from scientific literature
Updated 29 months ago
19 3
SIGA.py
SI
Make genome annotations semantically interoperable
Updated 29 months ago
11 2