All software

385-432 of 1324

Visible vapor plumes in a tropical wet forest: R script

forest evaporation
lifting condensation layer
R script
+ 2

adhtools

Use adhtools for analyzing Arabic corpora.

Text analysis & natural language processing
Visualization
Workflow technologies

("Common Workflow Language")
(Java)
("Jupyter Notebook")
+ 1

Datastew

Datastew is a python library for intelligent data harmonization using Large Language Model (LLM) vector embeddings.

Data Harmonization
data stewardship
large language models
+ 1

(Python)

Data Storytelling

Developing consistent, structured ways to present data across projects. Using LLMs and interactive tools to turn results into clear, engaging stories. Applying this approach to selected eScience projects, especially those in the upcoming center-wide evaluation.

application
llm
storytelling
+ 1

(CSS)
(HTML)
(JavaScript)
+ 3

dhdt

A photohypsometric Python library to estimate glacier elevation change via optical remote sensing imagery

geospatial
Glacier
image
+ 2

(Python)
(TeX)

duqtools

Duqtools is a tool for Dynamic Uncertainty Quantification for Tokamak reactor simulations modelling.

fusion-reactor
modelling
python
+ 2

("Jupyter Notebook")
(Python)
(Shell)

eEcology Tracker calendar

Calendar overview with daily statistics of GPS-trackers used to track bird movements.

Visualization

(CSS)
(JavaScript)
(Makefile)
+ 5

ewatercycle

The eWaterCycle package makes it easier to use hydrological models without having intimate knowledge about how to install and run the models.

Inter-operability & linked data
Multi-scale & multi model simulations
Optimized data handling
+ 1

(Dockerfile)
(Python)

FAIRSECO

FAIRSECO provides a way to quickly analyse a variety of data and metrics of your software, and it allows you to explore the impact of your software on the academic world. Metadata is gathered from many different sources, which is then analysed and compiled into a clear overview.

Data Analysis
FAIR
Inter-operability & linked data
+ 2

(EJS)
(JavaScript)
(TypeScript)

fairtally

Create comprehensive reports on compliance with the fair-software.nl recommendations.

(Dockerfile)
(Python)
(Shell)

fairworkflows

A python library for constructing, annotating and publishing scientific workflows described using semantic technologies.

("Common Workflow Language")
(HTML)
(Python)
+ 1

FlexRL

A Flexible Model For Record Linkage

latent variable model
partially identifying variables
record linkage
+ 1

(C++)
(R)

frbcatdb

A database to store a catalog of Fast Radio Bursts and expose them as Virtual Observation Events.

Optimized data handling

(Python)
(Shell)

frbcat-web

Provides an easy to-use web frontend to browse and filter the Fast Radio Burst Catalogue.

Optimized data handling
Visualization

(CSS)
(HTML)
(JavaScript)

GridFormat

Header-only C++ Library for grid file I/O

Grid-based PDE methods
grid file I/O
mesh file I/O
+ 3

(C++)
(CMake)
(Dockerfile)
+ 1

MOTrainer

Measurement Operator Trainer for data assimilation purposes.

Data assimilation
High performance computing
Machine learning
+ 2

("Jupyter Notebook")
(Python)
(Shell)
+ 1

NEWSGAC platform

Software for running the online platform of the NEWSGAC project for running explainable machine learning models on textual data

Explainable AI
Machine learning
Text analysis & natural language processing

(CSS)
(Dockerfile)
(HTML)
+ 4

ochre

A tool to clean up text generated by OCR using individual words as well as their context.

Machine learning
Text analysis & natural language processing

("Common Workflow Language")
(HTML)
("Jupyter Notebook")
+ 2

PathVisio

PathVisio is a free open-source software to curate biological pathway models.

bioinformatics
PathVisio
Systems Biology
+ 2

(Batchfile)
(CSS)
(HTML)
+ 4

PIDIMEHS library

Showcases a diachronic analysis of the Dutch Royal Library's newspaper archive.

Big data
Real time data analysis
Text analysis & natural language processing
+ 1

pyglotaran

A Python library for Global and Target Analysis of time-resolved spectroscopy data

biophysics
global analysis
glotaran
+ 3

(Nix)
(Python)

Ricgraph - Research in context graph

With Ricgraph (Research in context graph), you can create a graph from research information that is stored in various source systems. You can explore this graph and discover relations you were not aware of.

graph
graph database
research in context graph
+ 2

(CSS)
(Dockerfile)
(HTML)
+ 5

sfb-annotator

Annotate field books of natural history collections

Inter-operability & linked data

(CSS)
(Dockerfile)
(Java)
+ 4

ShiCo

A visualization that shows how the meaning we attach to a given concept shifts over time.

Text analysis & natural language processing
Visualization

(CSS)
(Dockerfile)
(HTML)
+ 3

swiftmhc

SwiftMHC is a deep learning algorithm for predicting pMHC structure and binding affinity at the same time.

deep learning
Protein-Protein Interaction
Transformer

("Jupyter Notebook")
(Mask)
(Python)
+ 1

tortellini

GitHub action to check whether any licensing issues exist for given software.

(JavaScript)
(TypeScript)

Pedestrian random walk in NetLogo (ch2.1)

A collection of methods for random walk in NetLogo, including various movement restrictions, biases, and algorithm alternatives.

Place them on the map

Multiple agent placement in specific geographical location. Set up an input number of agents (turtles) at an input location (cell or patch) in an grid holding the input spatial data (map).

Epidemic Network

Experimental environment for testing of large array of theoretical conditions for development epidemic event within various quantitative, spatial and connectedness (network structure) aspects.

Preferential Attachment Network

This NetLogo algorithm simulates network formation using preferential attachment. New nodes are more likely to connect to existing nodes with higher degrees, reflecting a "lottery" system where popular nodes attract more links.

Visualising GIS Rasters and Vector Data in NetLogo

This module provides a framework for importing and visualising GIS data in NetLogo. It supports continuous raster data visualised using colour gradients, binary and categorical raster data visualised using discrete colour assignments, and point-based vector data visualised as turtle agents.

AnisoVision

Data accompanying the publication: Characterization of the 3D-optical properties of van der Waals materials with deep learning based coherent Fourier scatterometry

anisotropic thin films
coherent Fourier scatterometry
deep learning metrology
+ 2

("Jupyter Notebook")
(Markdown)
(Other)

auction-tas

Truck Appointment Systems - Auction Based

Auction
competition
Scheduling
+ 2

("Jupyter Notebook")
(large-text-file)
(Markdown)
+ 2

Code and data belonging to the publication "Data-enabled Predictive Repetitive Control"

Data-driven control
Data-enabled Predictive Control
Fundamental Lemma
+ 2

(Markdown)
(Matlab)
(Other)

Code underlying the publication: "Video BagNet: short temporal receptive fields increase robustness in long-term action recognition"

3D-CNN
Action recognition
BagNet
+ 2

(Markdown)
(Other)
(Python)
+ 1

CounterfactualExplanations.jl

Software and data underlying the publication: Explaining Black-Box Models through Counterfactuals

Algorithmic Recourse
Counterfactual Explanations
explainable artificial intelligence
+ 1

(CSS)
(JavaScript)
(JSON)
+ 7

Data and Code for "Same Signal, Different Story: Demystifying Receiver Effects in Wi-Fi Channel State Information"

Channel state information
CSI
Human Activity Recognition (HAR)
+ 3

Data and code underlying the publication: Deep learning reveals key predictor of thermal conductivity of covalent organic frameworks

Covalent organic frameworks
deep learning
Thermal conductivity
+ 1

Effects of PLU Polling Interval

The codes associated with the publication: The Effects of PLU Polling Interval on the Reconstructed OD Matrix: A Dutch Case Study Using a Data-Driven Method

Bayesian
GSM
OD matrix
+ 2

("Jupyter Notebook")
(Markdown)
(Other)

epistemic-bellman-operators

Epistemic Bellman Operators; code underlying the dissertation ‘Bayesian Model-Free Deep Reinforcement Learning’

Bayesian modelling
Deep Reinforcement Learning (DRL)
dynamic programming
+ 2

("Jupyter Notebook")
(Markdown)
(Python)

Filtering-explanding-graph-signals

Code underlying the publication: Online graph filter design over expanding graphs

expanding graphs
graph filters
graph signal processing
+ 2

(Matlab)
(Other)

Hodge-Edge-GP

Code underlying: Hodge-Compositional Edge Gaussian Processes

edge space
forex
Gaussian process
+ 2

(JSON)
("Jupyter Notebook")
(Markdown)
+ 3

IntervalMDPAbstractions.jl_ReproducibilityPackage

Data and code underlying the publication: Scalable control synthesis for stochastic systems via structural IMDP abstractions

embedded systems
Markov processes
Stochastic control and optimization

(C)
(C++)
(HTML)
+ 10

longterm_datasets

Code underlying the publication: "Are current long-term video understanding datasets long-term?"

computer vision
deep learning
Long-term action recognition

(HTML)
(Markdown)
(Other)
+ 2

LOV3D

LOV3D: A Spectral Method to Compute the Tides of Laterally Heterogenous Bodies (v2.3)

Natural Satellites
Planetary Sciences
Tides

(CSS)
(HTML)
(Markdown)
+ 2

mean-field-quantum-networks

Code underlying the publication: Service-the-Longest-Queue Among d Choices Policy for Quantum Entanglement Switching

entanglement generation switch
load-balancing.
mean-field analysis
+ 1

(JSON)
(Julia)
(Markdown)
+ 2

mpcrl-vehicle-gears

Software underlying publications: Learning-based MPC for fuel efficient control of autonomous vehicles with discrete gear selection and Reinforcement Learning with Distributed MPC for Fuel-Efficient Platoon Control with Discrete Gear Transitions

autonomous driving
Model predictive control
Reinforcement learning
+ 1

(Markdown)
(Other)
(Python)

NetLogo model: "Urbanism and Geographic Crises: A Micro-Simulation Lens on Beirut"

agent-based simulation
Beirut
econometrics
+ 3