Software | Research Software Directory

Out of Africa - Conditional isotropic diffusion

A reimplementation of the classical study by Young and Bettinger (1992) investigating the possible drivers behind the Out of Africa dispersal of modern humans.

4

2

Landscape and Land Cover Generation

This algorithm generates landscapes and landcovers in contiguous zones. Users can define different landscape types, landcovers and rules for settlement placement in the setup procedure. It is designed to allow flexible configuration of environmental and social parameters.

1

2

SyGMa

SyGMa provides fast and lightweight predictions of human metabolites to support discovery scientists design better and safer drugs

Workflow technologies

Python

2

agda-core

Code underlying the publication: Building a Correct-By-Construction Type Checker for a Dependently Typed Core Language

core language
Dependent Types
type-checking
+ 2

Haskell
Markdown
Other
+ 1

2

Catalyst

Morph: Code Supporting the Publication: Dynamic Topology Optimization for Non-IID Data in Decentralized Learning

asynchronous
Byzantine Robustness
Client Heterogeneity
+ 1

Jupyter Notebook
Markdown
Other
+ 2

1

2

Code and data belonging to the publication "Data-enabled Predictive Repetitive Control"

Data-driven control
Data-enabled Predictive Control
Fundamental Lemma
+ 2

Markdown
Matlab
Other

4

2

Code and data supporting the paper “Pushing the Boundary of Event Subsampling in Event-Based Video Classification Using CNNs”

Event-based video classification
Event cameras
event-count accuracy trade-off
+ 2

3

2

Code supporting the paper: High-speed predictions of post-burn contraction using a neural network trained on 2D-finite element simulations

Feedforward neural network
Machine learning
Monte Carlo simulations
+ 2

3

2

Code supporting the paper "Making Every Event Count: Balancing Data Efficiency and Accuracy in Event Camera Subsampling"

accuracy–efficiency trade-offs
Event-based video classification
event camera
+ 2

3

2

Code to produce the results of the publication: “Reducing the Soleus Stretch Reflex with Conditioning: Exploring Game- and Impedance-based Biofeedback”

Electromyography (EMG)
Gamification
operant conditioning
+ 2

1

2

Code underlying the publication: A Benchmark for the Application of Distributed Control Techniques to the Electricity Network of the European Economic Area

distributed model predictive control
Electricity Market
European Power Grid
+ 2

Markdown
Matlab
Other

3

2

Code underlying the publication: Exploiting Learned Symmetries in Group Equivariant Convolutions

equivariance
equivariant convolutions
separable convolutions

Markdown
Other
Python

2

Code underlying the publication: "Humans disagree with the IoU for measuring object detector localization error."

Human preference
Intersection over Union (IoU)
Object detection

Jupyter Notebook
Markdown
Other

3

2

Code underlying the publication: "Video BagNet: short temporal receptive fields increase robustness in long-term action recognition"

3D-CNN
Action recognition
BagNet
+ 2

Markdown
Other
Python
+ 1

4

2

Dataset-NonDimensionalisationQMOM

Data to reproduce the paper: "Non-dimensionalization of quadrature method of moments for wet granulation"

10th granulation conference Sheffield
Buckingham Theorem
non-dimensionalization
+ 3

Markdown
Matlab
Other
+ 1

3

2

det2d-read

Python package to read 2D human poses from json files

2D pose detection
Data loading
Multiprocessing
+ 1

JSON
Markdown
Other
+ 2

1

2

Dynamic-Graph-Decomposition

Code underlying the publication: Tensor Graph Decomposition for Temporal Networks

decomposition
dynamic graphs
graph signal processing
+ 1

Matlab
Other

2

hybrid-vehicle-platoon

Software for publication: A comparison benchmark for distributed hybrid MPC control methods: Distributed vehicle platooning

autonomous vehicles
distributed model predictive control
Hybrid Systems
+ 2

Markdown
Other
Python

1

2

LOV3D

LOV3D: A Spectral Method to Compute the Tides of Laterally Heterogenous Bodies (v2.3)

Natural Satellites
Planetary Sciences
Tides

CSS
HTML
Markdown
+ 2

3

2

MC_RB_EM_1D

Data and scripts underlying the publication: Estimation of electrical conductivity models using multi-coil rigid-boom electromagnetic induction measurements

electromagnetic induction
frequency domain electromagnetics
inversion

Jupyter Notebook
Markdown
Other
+ 1

3

2

oraqle

Oraqle: A Depth-Aware Secure Computation Compiler

arithmetization
compiler
cryptography
+ 1

C++
Jupyter Notebook
Markdown
+ 4

1

2

ProbabilisticValidation

Source code underlying the publication: Privacy-Preserving Data Aggregation with Probabilistic Range Validation

privacy-preserving summation
range validation
secure multi-party computation
+ 1

Markdown
Matlab

2

SO-CRYSTAL

Code underlying: Shape Optimization of Scintillation Crystals through GEANT4 and NSGAII (SO-CRYSTAL)

Finite-difference time-domain method
Genetic algorithms
Material properties
+ 2

C++
Markdown
Other
+ 1

1

2

Software for "Smart 3D super-resolution microscopy reveals the architecture of the RNA scaffold in a nuclear body"

Architectural RNA
Morphological Sorting
NEAT1
+ 6

8

2

Software underlying the article: Modelling the cross-sectional dynamics of tidal sandbanks in sediment-scarce conditions

Asymmetry
Coastal Engineering
Equilibrium shape
+ 12

3

2

TU/e Microscopic Energy Consumption PRediction tOol 0.1 (TU/e MECPRO 0.1)

Automotive Engineering
Battery Electric Vehicle
Electric Vehicle (EV)
+ 3

4

2

ADHTEB

ADHTEB (Alzheimer’s Disease Harmonization Text Embedding Benchmark) is a Python package designed to evaluate the performance of text-embedding models in harmonizing variable descriptions from diverse cohorts in the context of Alzheimer’s disease.

alzheimers disease
benchmark
large language models
+ 1

Python

4

2

adhtools

Use adhtools for analyzing Arabic corpora.

Text analysis & natural language processing
Visualization
Workflow technologies

Common Workflow Language
Java
Jupyter Notebook
+ 1

2

Datastew

Datastew is a python library for intelligent data harmonization using Large Language Model (LLM) vector embeddings.

Data Harmonization
data stewardship
large language models
+ 1

Python

2

Data Storytelling

Developing consistent, structured ways to present data across projects. Using LLMs and interactive tools to turn results into clear, engaging stories. Applying this approach to selected eScience projects, especially those in the upcoming center-wide evaluation.

application
llm
storytelling
+ 1

CSS
HTML
JavaScript
+ 3

3

2

dhdt

A photohypsometric Python library to estimate glacier elevation change via optical remote sensing imagery

geospatial
Glacier
image
+ 2

Python
TeX

2

duqtools

Duqtools is a tool for Dynamic Uncertainty Quantification for Tokamak reactor simulations modelling.

fusion-reactor
modelling
python
+ 2

Jupyter Notebook
Python
Shell

2

eEcology Tracker calendar

Calendar overview with daily statistics of GPS-trackers used to track bird movements.

Visualization

CSS
JavaScript
Makefile
+ 5

1

2

ewatercycle

The eWaterCycle package makes it easier to use hydrological models without having intimate knowledge about how to install and run the models.

Inter-operability & linked data
Multi-scale & multi model simulations
Optimized data handling
+ 1

Dockerfile
Python

10

2

FAIRSECO

FAIRSECO provides a way to quickly analyse a variety of data and metrics of your software, and it allows you to explore the impact of your software on the academic world. Metadata is gathered from many different sources, which is then analysed and compiled into a clear overview.

Data Analysis
FAIR
Inter-operability & linked data
+ 2

EJS
JavaScript
TypeScript

3

2

fairtally

Create comprehensive reports on compliance with the fair-software.nl recommendations.

Dockerfile
Python
Shell

4

2

fairworkflows

A python library for constructing, annotating and publishing scientific workflows described using semantic technologies.

Common Workflow Language
HTML
Python
+ 1

5

2

FlexRL

A Flexible Model For Record Linkage

latent variable model
partially identifying variables
record linkage
+ 1

C++
HTML
R

1

2

frbcatdb

A database to store a catalog of Fast Radio Bursts and expose them as Virtual Observation Events.

Optimized data handling

Python
Shell

2

frbcat-web

Provides an easy to-use web frontend to browse and filter the Fast Radio Burst Catalogue.

Optimized data handling
Visualization

CSS
HTML
JavaScript

1

2

GridFormat

Header-only C++ Library for grid file I/O

Grid-based PDE methods
grid file I/O
mesh file I/O
+ 3

C++
CMake
Dockerfile
+ 1

2

MOTrainer

Measurement Operator Trainer for data assimilation purposes.

Data assimilation
High performance computing
Machine learning
+ 2

Jupyter Notebook
Python
Shell
+ 1

7

2

NEWSGAC platform

Software for running the online platform of the NEWSGAC project for running explainable machine learning models on textual data

Explainable AI
Machine learning
Text analysis & natural language processing

CSS
Dockerfile
HTML
+ 4

3

2

ochre

A tool to clean up text generated by OCR using individual words as well as their context.

Machine learning
Text analysis & natural language processing

Common Workflow Language
HTML
Jupyter Notebook
+ 2

1

2

PathVisio

PathVisio is a free open-source software to curate biological pathway models.

bioinformatics
PathVisio
Systems Biology
+ 2

Batchfile
CSS
HTML
+ 4

9

2

PIDIMEHS library

Showcases a diachronic analysis of the Dutch Royal Library's newspaper archive.

Big data
Real time data analysis
Text analysis & natural language processing
+ 1

2

pyglotaran

A Python library for Global and Target Analysis of time-resolved spectroscopy data

biophysics
global analysis
glotaran
+ 3

Nix
Python

4

2

Ricgraph - Research in context graph

With Ricgraph (Research in context graph), you can create a graph from research information that is stored in various source systems. You can explore this graph and discover relations you were not aware of.

graph
graph database
research in context graph
+ 2

CSS
Dockerfile
HTML
+ 5

1

2