All software
Soil suitability maps for agriculture for the province Noord-Brabant (Netherlands) created with WaterVissionAgriculture and scripts to generate input data and to run the model WWL-tabel
Soil suitability maps for agriculture for the province Noord-Brabant (Netherlands) created with WaterVissionAgriculture and scripts to generate input data and to run the model WWL-tabel
- Agriculture
- crop production
- soil suitability
- + 2
Source code for: Assessing the Validity of a Calcifying Oral Biofilm Model as a Suitable Proxy for Dental Calculus
Source code for: Assessing the Validity of a Calcifying Oral Biofilm Model as a Suitable Proxy for Dental Calculus
- dental calculus
- Fourier-transform infrared spectroscopy (FTIR)
- metagenomics
- + 2
swinging-kite
Swinging Motion of a Kite with Suspended Control Unit Flying Turning Manoeuvres (Code)
- Airborne Wind Energy (AWE)
- Flight data analysis
- Kite power
- + 2
- Python
- Other
- YAML
- + 1
TU/e Microscopic Energy Consumption PRediction tOol 0.1 (TU/e MECPRO 0.1)
TU/e Microscopic Energy Consumption PRediction tOol 0.1 (TU/e MECPRO 0.1)
- Automotive Engineering
- Battery Electric Vehicle
- Electric Vehicle (EV)
- + 3
Analizo
Analizo is a free, multi-language, extensible source code analysis. It supports the extraction and calculation of a fair number of source code metrics, generation of dependency graphs, and software evolution analysis.
- Software Evolution
- Source Code Metrics
- Static Analysis
- Perl
- C++
- C
- + 7
anonymoUUs
Python package to replace identifiable strings in multiple files and folders at once
- de-identification
- python
- text
- Python
- Jupyter Notebook
Baklava
Deploys a Kubernetes cluster and big data services on the cloud.
- Big data
- High performance computing
- Optimized data handling
- Python
- HCL
- Dockerfile
- + 2
BenchmarkRecovery
This project simulates Landsat data and evaluates the performance of recovery indicators with respect to data and disturbance characteristics.
- R
BIRCH
BIRCH is a powerful framework for organizing and using bioinformatics. BIRCH comes with hundreds of commonly-used tools, and allows you to customize your BIRCH site by adding new ones.
- bioinformatics
- BLAST
- genomics
- + 3
BrainBrowser
BrainBrowser is an open source JavaScript library exposing a set of web-based 3D visualization tools primarily targetting neuroimaging
- 3D
- brainbrowser
- neurology
- + 2
- JavaScript
- Python
- CSS
- + 1
byteparsing
Parser library for reading custom binary files from Python.
- Big data
- Multi-scale & multi model simulations
- Optimized data handling
- Jupyter Notebook
- Python
- C++
- + 5
CBRAIN
CBRAIN is a flexible Ruby on Rails framework for accessing and processing of large data on high-performance computing infrastructures.
- CBRAIN
- cluster
- Data Analysis
- + 6
- Ruby
- HTML
- JavaScript
- + 3
ChemTools
ChemTools is a free and open source Python library for interpreting the results of quantum chemistry calculations.
- atoms in molecules
- conceptual dft
- density matrices kinetic energy density
- + 2
- Python
dCacheFS
Python file-system interface for dCache storages.
- Data
- Inter-operability & linked data
- Optimized data handling
- + 1
- Python
- Jupyter Notebook
Emo-spectre
Interactive visualization and exploration of multi modal time-series data and video
- Visualization
- Workflow technologies
- PLpgSQL
- Vue
- JavaScript
- + 5
emvoice
A Python package for computing emotion expression-related features from speech signals.
- Emotion expressions
- python
- Speech processing
- Python
- Shell
FAIRSECO
FAIRSECO provides a way to quickly analyse a variety of data and metrics of your software, and it allows you to explore the impact of your software on the academic world. Metadata is gathered from many different sources, which is then analysed and compiled into a clear overview.
- Data Analysis
- FAIR
- Inter-operability & linked data
- + 2
- TypeScript
- EJS
- JavaScript
Lysander
Find people on Twitter given a small initial set of interesting people.
- Text analysis & natural language processing
- Python
GameBus FHIR Layer
Enable FHIR service for GameBus and beyond
- Data Harmonization
- FHIR
- healthcare
- + 1
- Java
- Dockerfile
- Shell
Geodisy
Geodisy is a research data discovery tool that harvests information from existing research data repositories and displays applicable records onto a map-based search interface.
- geospatial
- metadata
- research data
- Java
- Ruby
- XSLT
- + 6
GridFormat
Header-only C++ Library for grid file I/O
- Grid-based PDE methods
- grid file I/O
- mesh file I/O
- + 3
- C++
- CMake
- Python
- + 1
IRIDA
Integrated Rapid Infectious Disease Analysis (IRIDA) platform is a user-friendly, distributed, open source bioinformatics and analytical web platform that was developed to support real-time infectious disease outbreak investigations using whole genome sequencing data.
- genomics
- infectious disease
- Java
- JavaScript
- TypeScript
- + 6
ISAAC Chrome extension
Chrome Web Extension for support of the NWO ISAAC platform. This extension is not endorsed or developed by the NWO.
- BibTeX
- CITATION.cff
- DataCite
- + 1
- JavaScript
- HTML
- CSS
- + 1
i-VRESSE workflow-builder
Need to write a complex config file then the i-VRESSE workflow builder might be the tool for you.
- Workflow technologies
- TypeScript
- Python
- CSS
- + 3
LORIS
Longitudinal Online Research and Imaging System (LORIS) is a web-based data and project management software for neuroimaging research studies. It is an OPEN SOURCE framework for storing and processing behavioural, clinical, neuroimaging and genetic data.
- Computational Neuroscience
- database
- neuroimaging
- + 3
- PHP
- JavaScript
- TypeScript
- + 9
Mahiru
A prototype for a federated, distributed data sharing and processing system.
- Data processing
- Data Sharing
- Policies
- + 1
- Python
- Makefile
- Dockerfile
- + 2
Massive PotreeConverter
Use parallel processing to quickly convert large point cloud data sets to the format used by the Potree viewer.
- Big data
- Optimized data handling
- Python
Mass Spec Studio
A user-friendly, fully extensible framework for mass spectrometry analysis.
- mass spectrometry
- proteins
MMSODA Toolbox for MATLAB
MATLAB toolbox for global optimization and state estimation of dynamic models using distributed computing.
- HTML
- MATLAB
- TeX
- + 5
Motus Wildlife Tracking System
The Motus Wildlife Tracking System (Motus) is an international collaborative research network that uses coordinated automated radio telemetry to facilitate research and education on the ecology and conservation of migratory animals.
- conservation science
- movement ecology
- wildlife tracking
- R
mzRecal
mzRecal recalibrates mass spectrometry (MS1) data in mzML format, using peptide identifications in mzIdentML.
- mass spectrometry
- proteomics
- Go
- Shell
- R
- + 2
NPLinker
Microbial natural products data mining by integrating genomics and metabolomics data
- Data processing
- multi-omics integration
- Python
- TeX
- Shell
- + 2
Open Computational Multiphysics
OpenCMP is a computational multiphysics software package based on the finite element method
- Computational Fluid Dynamics (CFD)
- computational Multiphysics
- diffuse interface method
- + 3
- Python
- TeX
OpenMS
OpenMS is an open-source software C++ library for LC-MS data management and analyses. It offers an infrastructure for rapid development of mass spectrometry related software. OpenMS is free software available under the three clause BSD license and runs under Windows, macOS, and Linux.
- C++
- mass spectrometry
- metabolomics
- + 1
- C++
- MAXScript
- Cython
- + 15
OpenPNM
OpenPNM is an open source project aiming to provide porous media researchers with a ready-made framework for performing a wide range of pore network simulations.
- Pore network modeling
- C++
- MAXScript
- Cython
- + 15
openPSTD
openPSTD is a Python-based research software that allows efficient and detailed calculation of sound propagation in a 2D built environment. It is especially useful as a reference tool for other developed software on acoustic sound propagation.
- Acoustics
- GPU
- python
- C++
- C
- GLSL
- + 3
PAVICS
PAVICS is a virtual laboratory facilitating the analysis of climate data. It provides access to several data collections ranging from observations, climate projections and reanalyses. It also provides a Python programming environment to analyze this data without the need to download it.
- analysis
- climate
- Climate change
- + 5
- HTML
- Jupyter Notebook
- Python
- + 3
PhenoTips
PhenoTips is a software tool that makes it easy for clinicians and researchers to draw pedigrees and collect structured phenotype data for patients with genetic disorders.
- API
- deep phenotyping
- genogram
- + 6
- Java
- JavaScript
- HTML
- + 4
Plus Toolkit
Toolkit for data acquisition, pre-processing, calibration, and real-time streaming of imaging, position tracking, and other sensor data for medical applications.
- 3D Slicer
- electromagnetic tracking
- image capture
- + 7
- C++
- C
- CMake
- + 2
PoreSpy
PoreSpy is a collection of image analysis tools used to extract information from 3D images of porous materials (typically obtained from X-ray tomography).
- image analysis
- porous media
- tomography
- Python
- Shell
- Batchfile
PowerSensor3
PowerSensor is a low-cost, custom-built device that measures the instantaneous power consumption of GPUs and other devices at a high time resolution.
- GPU
- High performance computing
- C
- C++
- Python
- + 3
qumia-train-scripts
Scripts and files related to ML training for the QUMIA project
- Machine learning
- Neuromuscular
- ultrasound imaging
- Jupyter Notebook
- Python
- Shell
ROBIST
Robust Optimization by Iterative Scenario Sampling and Statistical Testing
- optimization
- python
- Python
Rocket
Rocket is a framework for efficient execution of all-pair applications on heterogeneous platforms.
- Big data
- GPU
- High performance computing
- + 1
- Java
- Cuda
- C++
- + 2
Rucio deployment for KM3NeT
This repository contains the Rucio deployment for KM3NeT. It can be used as an example of how to deploy Rucio.
- Big data
- High performance computing
SalientDescriptor-matlab
If you need to automate your image matching tasks for the purposes of object detection or photo-identification in an easy way, the SalientDescriptor-matlab is right for you
- Image processing
- MATLAB
- HTML
SARXarray
An Xarray extension to process coregistered Single Look Complex (SLC) image stacks acquired by Synthetic Aperture Radar (SAR).
- Dask
- InSAR
- Interferometry
- + 6
- ReScript
- Python
scriptcwl
Create CWL workflows by writing a simple Python script.
- CWL
- Workflow technologies
- Python
- Common Workflow Language