Sign in


Workflow exploration and benchmarking platform in bioinformatics domain.

26 commits | Last commit 3 weeks ago

What Workflomics can do for you

The Workflomics platform aims to address the challenge faced by life science researchers who work with increasingly large and complex datasets and struggle to create optimal workflows for their data analysis problems.

The platform facilitates a "Great Bake Off" of computational workflows in bioinformatics by integrating bioinformatics tools and metadata with technologies for automated workflow exploration and benchmarking. This enables a systematic and rigorous approach to the development of cutting-edge workflows, specifically in the field of proteomics, to increase scientific quality, robustness, reproducibility, FAIRness, and maintainability.

The platform currently focuses on the proteomics domain. We aim to extend the platform to additional domains, e.g., metabolomics, genomics.

Logo of Workflomics
Programming languages
  • TypeScript 83%
  • HTML 10%
  • JavaScript 5%
  • CSS 1%
  • Apache-2.0
</>Source code

Participating organisations

Netherlands eScience Center
Leiden University Medical Center
University of Potsdam



Vedran Kasalica
Vedran Kasalica
Nauman Ahmed
Nauman Ahmed
Netherlands eScience Center
Peter Kok
Peter Kok

Related projects

Facilitating the "Great Bake Off" of Bioinformatics Workflows

Workflomics: A platform for automated generation and workflow benchmarking in bioinformatics

Updated 1 month ago

Related tools

APE (Automated Pipeline Explorer)


A command line tool and Java API for the automated exploration of possible computational pipelines (scientific workflows) from large collections of computational tools.

Updated 2 months ago
17 2