Sign in
Ctrl K

Workflomics

Workflow exploration and benchmarking platform in bioinformatics domain.

1
mention
7
contributors

Cite this software

What Workflomics can do for you

Workflomics: A Workflow Benchmarking Platform (front end)

Badges
Packages and ReleasesLatest release Static Badge
Build StatusBuild Frontend
Documentation StatusDocumentation Status
DOIDOI
LicenseGitHub

The Workflomics platform aims to address the challenge faced by life science researchers who work with increasingly large and complex datasets and struggle to create optimal workflows for their data analysis problems.

The platform facilitates a "Great Bake Off" of computational workflows in bioinformatics by integrating bioinformatics tools and metadata with technologies for automated workflow exploration and benchmarking. This enables a systematic and rigorous approach to the development of cutting-edge workflows, specifically in the field of proteomics, to increase scientific quality, robustness, reproducibility, FAIRness, and maintainability.

The platform currently focuses on the proteomics domain. We aim to extend the platform to additional domains, e.g., metabolomics, genomics.

Visit the live demo:
http://workflomics.org/

Logo of Workflomics
Keywords
Programming languages
  • TypeScript 93%
  • CSS 3%
  • HTML 2%
  • JavaScript 1%
License
</>Source code

Participating organisations

Netherlands eScience Center
Leiden University Medical Center
University of Potsdam

Reference papers

Mentions

Contributors

Nauman Ahmed
Nauman Ahmed
Netherlands eScience Center
Peter Kok
Peter Kok
FM
Felipe Morato
Software Engineer
CSC – IT Center for Science, Finland
Magnus Palmblad
Magnus Palmblad
Anna-Lena Lamprecht
Anna-Lena Lamprecht
Rob Marissen
Rob Marissen
Scientific software developer
Leiden University Medical Center

Related projects

Facilitating the "Great Bake Off" of Bioinformatics Workflows

Workflomics: A platform for automated generation and workflow benchmarking in bioinformatics

Updated 2 weeks ago
In progress

Related software

APE

AP

A CLI and Java API for the automated generation of computational pipelines (scientific workflows) from large collections of computational tools.

Updated 1 month ago
23 5

RESTful APE

RE

RESTfull API for the APE (Automated Pipeline Explorer) library.

Updated 1 month ago
3