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Workflomics

Workflow exploration and benchmarking platform in bioinformatics domain.

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What Workflomics can do for you

Workflomics: A Workflow Benchmarking Platform (front end)

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The Workflomics platform aims to address the challenge faced by life science researchers who work with increasingly large and complex datasets and struggle to create optimal workflows for their data analysis problems.

The platform facilitates a "Great Bake Off" of computational workflows in bioinformatics by integrating bioinformatics tools and metadata with technologies for automated workflow exploration and benchmarking. This enables a systematic and rigorous approach to the development of cutting-edge workflows, specifically in the field of proteomics, to increase scientific quality, robustness, reproducibility, FAIRness, and maintainability.

The platform currently focuses on the proteomics domain. We aim to extend the platform to additional domains, e.g., metabolomics, genomics.

Visit the live demo:
http://workflomics.org/

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Programming languages
  • TypeScript 93%
  • CSS 3%
  • HTML 2%
  • JavaScript 1%
License
  • Apache-2.0
</>Source code

Participating organisations

Netherlands eScience Center
Leiden University Medical Center
University of Potsdam

Reference papers

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Contributors

Nauman Ahmed
Nauman Ahmed
Netherlands eScience Center
Peter Kok
Peter Kok
FM
Felipe Morato
Software Engineer
CSC – IT Center for Science, Finland
Magnus Palmblad
Magnus Palmblad
Anna-Lena Lamprecht
Anna-Lena Lamprecht
Rob Marissen
Rob Marissen
Scientific software developer
Leiden University Medical Center

Related projects

Facilitating the "Great Bake Off" of Bioinformatics Workflows

Workflomics: A platform for automated generation and workflow benchmarking in bioinformatics

Updated 1 week ago
In progress

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