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1289 software items. Page 19 of 27. 48 items per page.
865-912 of 1289

Cerise

Cerise is a service for running CWL workflows on HPC resources. You add software, tool descriptions, and connection information, then your user runs workflows whenever they want.

  • High performance computing
  • Optimized data handling
  • Workflow technologies
  • ("Common Workflow Language")
  • (Dockerfile)
  • (Makefile)
  • + 2
1
0

CERR

CERR (pronounced 'sir'), stands for Computational Environment for Radiological Research. CERR is MATLAB based software platform for developing and sharing research results using radiation therapy treatment planning and imaging informatics.

  • Treatment Planning and dosimetry
  • ("AGS Script")
  • (Batchfile)
  • (C)
  • + 20
0
0

cerulean

A Python 3 library for talking to HPC clusters and supercomputers.

  • High performance computing
  • SFTP
  • SLURM
  • + 2
  • (Dockerfile)
  • (Python)
  • (Shell)
1
0

Cesium-ncWMS

Web Application that visualizes data stored in the NetCDF format on a globe.

  • Visualization
  • (CSS)
  • (Dockerfile)
  • (HTML)
  • + 1
2
0

cffconvert GitHub Action

GitHub action to validate CITATION.cff files, and convert to other citation formats using the dockerized version of cffconvert

3
0

CHAMP-EU

The Cornell-Holland Ab-initio Materials Package (CHAMP) is a quantum Monte Carlo suite of programs for electronic structure calculations. The code is developed by Claudia Filippi and Saverio Moroni, with significant contributions by Ravindra Shinde, N. Renaud, V. Azizi, E. Landinez, and S. Shepard.

  • Chemistry
  • High performance computing
  • Physics
  • + 1
  • (Assembly)
  • (Berry)
  • (Brainfuck)
  • + 13
7
0

check-deps

This Python script checks whether a given set of software dependencies is met. This script itself is completely stand-alone and depends only on Python being installed. You may include this script along with a `dependencies.ini` in a project that has a diverse set of dependencies.

  • Dependency Hell
  • python
  • Workflow technologies
  • (Awk)
  • (CSS)
  • (Makefile)
  • + 1
1
0

Chemical Analytics Platform

Chemical Analytics Platform is a freely available Virtual Machine encompassing tools, databases, and KNIME workflows.

  • Workflow technologies
  • (Shell)
  • (Smarty)
2
0

CIL

Provides modular optimisation framework for prototyping reconstruction methods. Tools for loading, preprocessing, visualising tomographic data.

  • Imaging and Image Processing
  • (C)
  • (C++)
  • (CMake)
  • + 2
0
0

Cityblocks

Python utility to generate local climate zone (LCZ) tiles for rendering in 3D in QGIS

  • (Python)
  • (QML)
2
0

classmodel/form

Form component that renders a JSON schema using Solid UI components.

2
0

CLASS-web

Implementation of the Chemistry Land-surface Atmosphere Soil Slab (CLASS) model that runs entirely in the browser. For more information on CLASS, see https://classmodel.github.io/.

  • web service
  • (CSS)
  • (HTML)
  • (JavaScript)
  • + 2
2
0

cleanX

CleanX is an open-source python library for exploring, cleaning and augmenting large datasets of X-rays, or certain other types of radiological images.

  • Image processing
  • Machine learning
  • (Dockerfile)
  • ("Jupyter Notebook")
  • (Python)
  • + 3
1
0

ClearCanvas

Provides an extensible and robust platform for medical imaging. Software derived from the project is not intended nor licensed for clinical use.

  • Software Engineering and Data Infrastructure
  • (ASP)
  • (C)
  • (C#)
  • + 7
0
0

ClimaNet

A Climate Aware Spatio Temporal Encoder Decoder

  • Big data
  • climate
  • deep learning
  • ("Jupyter Notebook")
  • (Python)
6
0

ClinDIG

ClinDIG provides a federated data management and analysis solution for clinical and genomic data while to provide opportunity for distributed analysis centred on protecting patient privacy.

  • clinical
  • federated
  • genomics
  • + 1
  • (CSS)
  • (Dockerfile)
  • ("Go Template")
  • + 5
2
0

ClinicalTemplateReader

Tool for automated planning in Eclipse. Supports different Eclipse versions.

  • Clinical workflow and applications
  • (C#)
0
0

clumped-processing

Clumped isotope measurement processing script for Thermo Fisher MAT 253 plus isotope ratio mass spectrometer with the Kiel IV

  • clumped isotope
  • Data Analysis
  • mass spectrometry
  • + 3
  • (HTML)
  • (R)
1
0

clumpedr

Clumpedr aims to facilitate analysis of clumped isotope data. It builds on isoreader which is used to import raw data files from the mass spectrometer, and most of the important data processing parts are based on Huntington et al. 2009 and Daëron et al. 2016.

  • Data Analysis
  • mass spectrometry
  • (Makefile)
  • (R)
  • (Rez)
2
0

Code Auditor

A package and command-line utility to audit code quality and compliance to the best practices.

  • code quality
  • conformity assessment
  • software development
  • (Python)
7
0

CoeusAI

The CoeusAI QGIS plugin is designed for exploration of multiband geospatial datasets. It lets the user iteratively train and retrain segmentation models in seconds. A combination of Deep learning and traditional machine learning is used, leveraging the best of both methods.

  • deep learning
  • gis
  • Machine learning
  • + 2
  • (Python)
3
0

Collens

Collens is a dynamic web-based tool designed for scholars to compare textual variants with annotations. Utilizing machine learning, it offers an efficient workflow for analyzing multiple versions of literary and scholarly documents.

  • digital humanities
  • Visualization
  • (CSS)
  • (HTML)
  • (JavaScript)
  • + 2
3
0

Compass-school

This Python implementation tries to model school choice and resulting school segregation based on the work of Schelling (1971) and Stoica & Flache (2014).

  • Agent-based modeling
  • (HTML)
  • (Python)
5
0

Compas Toolkit

The Compas Toolkit is a high-performance C++ library offering GPU-accelerated functions for use in quantitative MRI research.

  • GPU
  • High performance computing
  • MRI
  • (C)
  • (C++)
  • (CMake)
  • + 4
3
0

conehead

Early experimental development, code expected to change dramatically. Uses Python/Cython.

  • Treatment Planning and dosimetry
  • (Cython)
  • ("Jupyter Notebook")
  • (Python)
0
0

Conquest DICOM

Complete DICOM server offering storage, verification, query and retrieve with programmable SQL database tables.

  • Software Engineering and Data Infrastructure
0
0

ConvolutionalNeuralOperators.jl

Julia package to implement Convolutional Neural Operators

  • Julia Package
  • Machine learning
  • Scientific machine learning
  • (Julia)
1
0

cornerstone3D

Cornerstone is a set of JavaScript libraries that can be used to build web-based medical imaging applications. It provides a framework to build radiology applications such as the OHIF Viewer.

  • Software Engineering and Data Infrastructure
  • (CSS)
  • (HTML)
  • (JavaScript)
  • + 3
0
0

Cosimplat

Co-simulation framework made for RESCUE project

4
0

Cosmology.jl

Cosmology library for Julia

  • astronomy
  • Astrophysics
  • cosmology
  • + 1
  • (Julia)
1
0

CoupledNODE

CoupledNODE.jl is a SciML repository that extends NODEs (Neural Ordinary Differential Equations) to C-NODEs (Coupled Neural ODEs), providing a data-driven approach to modelling solutions for multiscale systems when exact solutions are not feasible.

  • Julia Language
  • Julia Package
  • Machine learning
  • + 1
  • (Julia)
  • (Shell)
5
0

rcrisp

rcrisp provides tools to automate the morphological delineation of riverside urban areas.

  • Data Analysis
  • geospatial
  • R
  • + 1
  • (R)
  • (TeX)
4
0

Cronian

Cronian is a Python package for building copper plate optimization models in Pyomo to optimize flexibility scheduling in multi-carrier integrated energy systems, which are specified through simple YAML and CSV files.

  • (Python)
  • (Shell)
3
0

CrowdED

CrowdED is a two-staged statistical guideline for optimal crowdsourcing experimental design in order to a-priori estimate optimal workers and tasks' assignment to obtain maximum accuracy on all tasks.

  • Citizen Science
  • Crowdsourcing
  • Data Simulation
  • (Dockerfile)
  • (Python)
  • (R)
2
0

ctqa

A Python-based toolkit for CT Quality Assurance (QA). Provides tools for performing common QA tests and generating reports.

  • Quality Assurance
  • (Batchfile)
  • (Python)
0
0

cudawrappers

The cudawrappers library is a C++ wrapper for the Nvidia C libraries such as the CUDA driver, NVRTC, and cuFFT.

  • accelerators
  • CUDA
  • GPU
  • (C)
  • (C++)
  • (CMake)
  • + 2
13
0

The Cultural Heritage AI Cookbook: Notebooks

Google Colab notebook that uses large language models for analyzing and expanding text metadata related to cultural heritage

  • cultural heritage
  • large language models
  • named entity linking
  • + 2
  • ("Jupyter Notebook")
  • (Python)
3
0

cvasl

This library allows exploration and analyses of neuroimaging datsets. The software was developed to allow implementation of multiple large data harmonization and machine learning algorithms over neuroradiology datasets. The core algorithms are implemented in Python.

  • (Batchfile)
  • (Dockerfile)
  • ("Jupyter Notebook")
  • + 3
0
0

CWERNIrevamped

An improved remake of the original CWERNI R- package. This package simulates community wide evolutionary rescue in a neutral community.

  • Community ecology
  • Community-wide evolutionary rescue
  • evolution
  • + 3
  • (R)
1
0

cwltool

The reference implementation of the Common Workflow Language standards

  • CommonWL
  • CWL
  • SciWorkflows
  • ("Common Workflow Language")
  • (Dockerfile)
  • (JavaScript)
  • + 4
7
0

CWRC-Writer

An in-browser text markup editor for collaborative editing of scholarly projects.

  • LOD
  • named entity linking
  • named entity Recognition
  • + 3
  • (CSS)
  • (HTML)
  • (JavaScript)
  • + 2
2
0

Data Processing (What Works When for Whom)

Data processing scripts for the project What Works When for Whom

  • ("Jupyter Notebook")
  • (Python)
  • (Shell)
1
0

DataStream

DataStream is a powerful online platform for sharing information about freshwater health. It is open access and built with communities, policy-makers and researchers in mind.

  • Water quality
  • watersheds
0
0

deid

Aims to provide best effort anonymization for medical images. Mirrors CTP cleaning method.

  • Software Engineering and Data Infrastructure
  • (Dockerfile)
  • (Python)
0
0

Democracy Datasets

Sentence-wise split datasets of country reports in CSV format

  • CSV
  • dataset
2
0

Democracy Scraping Tool

A scraping tool to scrape various sources of country reports.

  • scraping
  • (Python)
2
0

Democracy text classification

LLM transfer learning to classify country reports into democracy dimensions.

  • fine-tuning
  • llm
  • transfer learning
  • ("Jupyter Notebook")
  • (Python)
2
0

Democracy Topic Modelling

Various Jupyter notebooks for topic modelling on democracy texts including BERT and dictionary, keyword-based approaches.

  • BERT
  • dictionary
  • Topic Modelling
  • ("Jupyter Notebook")
  • (Python)
2
0