Sign in
Ctrl K

PanTools-pipeline-v4

General purpose Snakemake pipeline for PanTools v4.

5
contributors
11 commitsLast commit ≈ 5 months ago4 stars3 forks

What PanTools-pipeline-v4 can do for you

  • Create a pangenome and run all major PanTools analysis functions for pangenomes.
  • Create a panproteome and run all major PanTools analysis functions for panproteomes.
  • Create a pangenome and run all PanTools analysis functions required to make a PanVa instance
Keywords
Data Analysis
genomics
pangenomics
Programming languages
  • Python 98%
  • Dockerfile 1%
  • Shell 1%
License
</>Source code

Participating organisations

Wageningen University & Research

Contributors

SS
Sandra Smit
DvW
Dirk-Jan van Workum
DZ
Dionne Zaal
RvE
Roel van Esch
Wageningen University & Research
Thijs van Lankveld
Thijs van Lankveld

Related projects

Scaling up pangenomics for plant breeding

Delivering a pangenome approach that drastically improves the analytical power on plant data

Updated 8 months ago
Finished