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PanTools-pipeline-v4

General purpose Snakemake pipeline for PanTools v4.

5
contributors
12 commitsLast commit ≈ 1 month ago5 stars3 forks

Description

  • Create a pangenome and run all major PanTools analysis functions for pangenomes.
  • Create a panproteome and run all major PanTools analysis functions for panproteomes.
  • Create a pangenome and run all PanTools analysis functions required to make a PanVa instance
Keywords
Data Analysis
genomics
pangenomics
Programming languages
  • Python 98%
  • Dockerfile 1%
  • Shell 1%
License
</>Source code

Participating organisations

Wageningen University & Research

Contributors

SS
Sandra Smit
Wageningen University
DvW
Dirk-Jan van Workum
Wageningen University & Research
DZ
Dionne Zaal
Bejo Zaden B.V.
RvE
Roel van Esch
Wageningen University & Research
Thijs van Lankveld
Thijs van Lankveld
Netherlands eScience Center

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Updated 12 months ago
Finished