Collection of microbial analysis workflows to investigate microbiological community structure, characteristics and their degradation potential.
Methods implemented for comprehensive statistical, visual and meta-analysis of large, complex microbiome datasets derived from high-throughput sequencing (16S rRNA amplicon, shotgun metagenomics or metatranscriptomics). Most routines wrap—or reproduce programmatically—the functionality of the MicrobiomeAnalyst web suite and its underlying R packages, so that analyses can be executed reproducibly from the command line or in notebooks.
Innovative Technological Toolbox for Bioremediation
MiBiReMo (Microbiome Bioremediation Reaction Module) is a Python interface to the PhreeqcRM library. The package is designed to be coupled with transport models to simulate reactive transport in porous media, with applications in environmental and geochemical engineering.
Data handling and screening package of the Microbiome based remediation Prediction Tool
A collection of analytical and semi-semianalytical solutions for hydrogeological transport phenomena