Analyze retinal optical coherence tomography images.


Cite this software

What OCTSEG can do for you

  • The retinal layers and the blood vessels of retinal OCT scans can be segmented
  • Automated segmentation of 6 prominent retinal layers: the inner limiting membrane, outer nerve fiber layer boundary, and retinal pigment epithelium
  • Automated segmentation of the blood vessel positions on circular scans and batch processing of circular scans and manual correction of possible segmentation errors
  • Visualization of the data and the segmentation results, including enface views and thickness maps
  • Export of the segmentation results to CSV text files
  • Includes segmentation of phantom images
  • Successfully used in "A Lightpath for Optical Coherence Tomography Imaging" project
Programming language
  • MATLAB 100%
</>Source code

Participating organisations

Netherlands eScience Center


Contact person

Elena Ranguelova

Elena Ranguelova

Netherlands eScience Center
Mail Elena
Elena Ranguelova
Elena Ranguelova
Netherlands eScience Center
Markus Mayer