Wageningen University & Research
University and research institute specializing in agriculture and life sciences.
PanTools-pipeline-v4
General purpose Snakemake pipeline for PanTools v4.
- Data Analysis
- genomics
- pangenomics
- Python
- Dockerfile
- Shell
PanVA
Variant Analysis within Pangenomes.
- API
- Data Analysis
- pangenomics
- Vue
- TypeScript
- Python
- + 6
pbg-ld
Access integrated data on genes and associated traits in plants
- Data Analysis
- genomics
- Inter-operability & linked data
- PLpgSQL
- Shell
- Python
- + 2
QTLTableMiner++
Extract gene-trait associations from scientific literature
- Inter-operability & linked data
- Text analysis & natural language processing
- Java
- Shell
seahtrue
Seahtrue processes XF analyzer data on oxygen consumption and acidification from Agilent Wave .xlsx exports into tidy, nested tibbles, enabling reproducible analysis, preprocessing checks, advanced visualisation, and statistics for open metabolic research.
- bioconductor
- metabolism
- R
- + 2
- R
SIGA.py
Make genome annotations semantically interoperable
- Inter-operability & linked data
- Python
spec2vec
spec2vec is a novel similarity measure for comparing mass spectrometry data, which learns peak representations using Word2Vec.
- Machine learning
- Text analysis & natural language processing
- Python
- Batchfile
- Makefile
WAM2layers
WAM2layers is an atmospheric moisture-tracking model that can be used to determine where precipitation originally evaporated (backtracking), or where evaporated moisture eventually ends up (forward tracking).
- atmospheric rivers
- ERA5
- hydrological cycle
- + 4
- Python
- Jupyter Notebook
- Shell
WRFpy
WRFpy is a python application that provides an easy way to set up, run, and monitor Weather Research and Forecasting simulations
- Data Simulation
- python
- Python