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PanTools

PanTools is a pangenomic toolkit for comparative analysis of large number of genomes. It is developed in the Bioinformatics Group of Wageningen University, the Netherlands. Please cite the relevant publication(s) from the list of publications if you use PanTools in your research.

What PanTools can do for you

PanTools currently provides these functionalities:

  • Construction of a panproteome
  • Adding new genomes to the pangenome
  • Adding structural/functional annotations to the genomes
  • Detecting homology groups based on similarity of proteins
  • Optimization of homology grouping using BUSCO
  • Read mapping
  • Gene classification
  • Phylogenetic methods
Keywords
Data Analysis
Gene classification
pangenomics
Programming languages
  • Java 99%
  • Snakemake 1%
  • Python 0%
  • Roff Manpage 0%
License
</>Source code
Packages
git

Participating organisations

Wageningen University & Research
Netherlands eScience Center
SURF

Related projects

Scaling up pangenomics for plant breeding

Delivering a pangenome approach that drastically improves the analytical power on plant data

Updated 13 months ago
Finished