matchms
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Python library for fuzzy comparison of mass spectrum data and other Python objects
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spec2vec
spec2vec is a novel similarity measure for comparing mass spectrometry data, which learns peak representations using Word2Vec.
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What spec2vec can do for you
- Allows to learn abstract mass spectra representations from large mass spectral data sets (unsupervised learning).
- Computes mass spectra similarities that show a high correlation with actual molecular similarity.
Spec2vec is a novel spectral similarity score inspired by a natural language processing algorithm -- Word2Vec. Where Word2Vec learns relationships between words in sentences, spec2vec does so for mass fragments and neutral losses in MS/MS spectra. The spectral similarity score is based on spectral embeddings learnt from the fragmental relationships within a large set of spectral data.
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Reference papers
Mentions
Build a mass spectrometry analysis pipeline in Python using matchms — part II: Spec2Vec
Author(s): Florian Huber
Published in 2021
Build a mass spectrometry analysis pipeline in Python using matchms — part III: molecular…
Author(s): Florian Huber
Published in 2021
Blogposts
1Book section
3- 1.Author(s): Francesco Russo, Filip Ottosson, Justin J. J. van der Hooft, Madeleine ErnstPublished in Lecture Notes in Computer Science, From Computational Logic to Computational Biology by Springer Nature Switzerland in 2024, page: 128-14410.1007/978-3-031-55248-9_7
- 2.Author(s): Paulo Wender P. Gomes, Talita Carla de Tralia Medeiros, Naydja Moralles Maimone, Tiago F. Leão, Luiz Alberto Beraldo de Moraes, Anelize BauermeisterPublished in Advances in Experimental Medicine and Biology, Microbial Natural Products Chemistry by Springer International Publishing in 2023, page: 225-24810.1007/978-3-031-41741-2_9
- 3.Author(s): Morgan B. Harris, Mahbobeh Lesani, Zongyuan Liu, Laura-Isobel McCallPublished in Methods in Enzymology, Antimicrobial Peptides by Elsevier in 2022, page: 341-37510.1016/bs.mie.2021.09.018
Computer programs
1Journal articles
110- 1.Author(s): Katherine D. Holmes, Paul V. A. Fine, Italo Mesones, Julieta Alvarez-Manjarrez, Andressa M. Venturini, Kabir G. Peay, Diego SalazarPublished in 202510.3390/plants14020225
- 2.Author(s): Xiaodong Bao, Lindong Shang, Fuyuan Chen, Hao Peng, Yu Wang, Xusheng Tang, Yan Ge, Bei LiPublished in Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy by Elsevier BV in 2025, page: 12520710.1016/j.saa.2024.125207
- 3.Author(s): Wenxiang Fan, Ziwei Li, Longchan Liu, Yu Wang, Kaixian Chen, Linnan Li, Zhengtao Wang, Li YangPublished in Talanta by Elsevier BV in 2025, page: 12692110.1016/j.talanta.2024.126921
- 4.Author(s): Kevin Mildau, Henry Ehlers, Mara Meisenburg, Elena Del Pup, Robert A. Koetsier, Laura Rosina Torres Ortega, Niek F. de Jonge, Kumar Saurabh Singh, Dora Ferreira, Kgalaletso Othibeng, Fidele Tugizimana, Florian Huber, Justin J. J. van der HooftPublished in Natural Product Reports by Royal Society of Chemistry (RSC) in 202510.1039/d4np00039k
- 5.Author(s): Chaofu Wang, Ping Xu, Lingyun Xue, Yian Liu, Ming Yan, Anqi Chen, Shundi Hu, Luhong WenPublished in International Journal of Mass Spectrometry by Elsevier BV in 2025, page: 11738810.1016/j.ijms.2024.117388
- 6.Author(s): Thomas O. Metz, Christine H. Chang, Vasuk Gautam, Afia Anjum, Siyang Tian, Fei Wang, Sean M. Colby, Jamie R. Nunez, Madison R. Blumer, Arthur S. Edison, Oliver Fiehn, Dean P. Jones, Shuzhao Li, Edward T. Morgan, Gary J. Patti, Dylan H. Ross, Madelyn R. Shapiro, Antony J. Williams, David S. WishartPublished in Analytical Chemistry by American Chemical Society (ACS) in 2024, page: 1-1110.1021/acs.analchem.4c04060
- 7.Author(s): Naydja M. Maimone, Alana K. Pereira, Leila Gimenes, Hocelayne P. Fernandes, Taícia P. Fill, Ricardo M. Borges, Simone P. Lira, João B. Fernandes, Anelize BauermeisterPublished in Revista Virtual de Química by Sociedade Brasileira de Quimica (SBQ) in 2024, page: 248-27010.21577/1984-6835.20230066
- 8.Author(s): Xinmeng Li, Yan Zhou Chen, Apurva Kalia, Hao Zhu, Li-ping Liu, Soha HassounPublished in Bioinformatics by Oxford University Press (OUP) in 202410.1093/bioinformatics/btae490
- 9.Author(s): Jasmine Eshun, Natalie C Lamar, Sinan G Aksoy, Sarah Akers, Benjamin Garcia, Heather Cunningham, George Chin, Jenna A BilbreyPublished in Microscopy and Microanalysis by Oxford University Press (OUP) in 202410.1093/mam/ozae068
- 10.Author(s): Luis-Manuel Quiros-Guerrero, Laurence Marcourt, Nathareen Chaiwangrach, Alexey Koval, Emerson Ferreira Queiroz, Bruno David, Antonio Grondin, Vladimir L. Katanaev, Jean-Luc WolfenderPublished in Frontiers in Chemistry by Frontiers Media SA in 202410.3389/fchem.2024.1371982
- 11.Author(s): Jérôme Hui, Alexandre Muller, John M. Alred, Maxwell G. Martin, Carlos E. Soares, Mark S. AndersonPublished in Journal of Spacecraft and Rockets by American Institute of Aeronautics and Astronautics (AIAA) in 2024, page: 1-810.2514/1.a36144
- 12.Author(s): Sadjad Fakouri Baygi, Dinesh Kumar BarupalPublished in Journal of Cheminformatics by Springer Science and Business Media LLC in 202410.1186/s13321-024-00804-5
- 13.Author(s): Yanghao Sheng, Ying Xue, Jue Wang, Shao Liu, Yueping JiangPublished in Journal of Pharmaceutical and Biomedical Analysis by Elsevier BV in 2024, page: 11587710.1016/j.jpba.2023.115877
- 14.Author(s): Kaiyuan Liu, Chenghua Tao, Yuzhen Ye, Haixu TangPublished in Bioinformatics by Oxford University Press (OUP) in 2024, page: i257-i26510.1093/bioinformatics/btae220
- 15.Author(s): Haotian Wang, Laijin Zhong, Wenyuan Su, Ting Ruan, Guibin JiangPublished in TrAC Trends in Analytical Chemistry by Elsevier BV in 2024, page: 11798810.1016/j.trac.2024.117988
- 16.Author(s): Luo Hai, Ziming Jiang, Haoxuan Zhang, Yingli SunPublished in Frontiers in Immunology by Frontiers Media SA in 202410.3389/fimmu.2024.1514977
- 17.Author(s): Hailiang Zhang, Qiong Yang, Ting Xie, Yue Wang, Zhimin Zhang, Hongmei LuPublished in Analytical Chemistry by American Chemical Society (ACS) in 2024, page: 16599-1660810.1021/acs.analchem.4c02426
- 18.Author(s): Yuyan Ji, Yitao Pan, Xinchen Miao, Congcong Wang, Nan Sheng, Zhaoben Su, Leo W. Y. Yeung, Jiayin DaiPublished in 202410.1021/acs.est.4c11961
- 19.Author(s): Michael A. StravsPublished in CHIMIA by Swiss Chemical Society in 2024, page: 525-53010.2533/chimia.2024.525
- 20.Author(s): Xuebing Wang, Nanyang Yu, Zhaoyu Jiao, Laihui Li, Hongxia Yu, Si WeiPublished in Science Advances by American Association for the Advancement of Science (AAAS) in 202410.1126/sciadv.adn1039
- 21.Author(s): Pfano W. Maphari, Mthokozisi B. C. Simelane, Ntakadzeni E. Madala, Msizi I. MhlongoPublished in Phytochemical Analysis by Wiley in 202410.1002/pca.3446
- 22.Author(s): Manon Meunier, Andreas Schinkovitz, Séverine DerbréPublished in Natural Product Reports by Royal Society of Chemistry (RSC) in 2024, page: 1766-178610.1039/d4np00006d
- 23.Author(s): Jefferson Brendon Almeida dos Reis, Adriana Sturion Lorenzi, Danilo Batista Pinho, Patrícia Cardoso Cortelo, Helson Mario Martins do ValePublished in Archives of Microbiology by Springer Science and Business Media LLC in 202410.1007/s00203-024-03911-x
- 24.Author(s): Ananda da Silva Antonio, Gustavo Ramalho Cardoso dos Santos, Henrique Marcelo Gualberto Pereira, Valdir Florêncio da Veiga-Junior, Larissa Silveira Moreira WiedemannPublished in Plants by MDPI AG in 2024, page: 85910.3390/plants13060859
- 25.Author(s): Danh Bui-Thi, Youzhong Liu, Jennifer L. Lippens, Kris Laukens, Thomas De VijlderPublished in Journal of Cheminformatics by Springer Science and Business Media LLC in 202410.1186/s13321-024-00858-5
- 26.Author(s): Arnaud Gaudry, Marco Pagni, Florence Mehl, Sébastien Moretti, Luis-Manuel Quiros-Guerrero, Luca Cappelletti, Adriano Rutz, Marcel Kaiser, Laurence Marcourt, Emerson Ferreira Queiroz, Jean-Robert Ioset, Antonio Grondin, Bruno David, Jean-Luc Wolfender, Pierre-Marie AllardPublished in ACS Central Science by American Chemical Society (ACS) in 2024, page: 494-51010.1021/acscentsci.3c00800
- 27.Author(s): Yiming Yang, Shuang Sun, Shuyuan Yang, Qin Yang, Xinqiong Lu, Xiaohao Wang, Quan Yu, Xinming Huo, Xiang QianPublished in Communications Chemistry by Springer Science and Business Media LLC in 202410.1038/s42004-024-01189-0
- 28.Author(s): Kevin Mildau, Henry Ehlers, Ian Oesterle, Manuel Pristner, Benedikt Warth, Maria Doppler, Christoph Bueschl, Jürgen Zanghellini, Justin J. J. van der HooftPublished in Analytical Chemistry by American Chemical Society (ACS) in 2024, page: 5798-580610.1021/acs.analchem.3c04444
- 29.Author(s): Ana Bendejacq-Seychelles, Lisa Martinez, Anaïs Corréard, Jean Chrisologue Totozafy, Christian Steinberg, Jean-Bernard Pouvreau, Carole Reibel, Grégory Mouille, Samuel Mondy, Lucie Poulin, Stéphanie Gibot-LeclercPublished in Toxins by MDPI AG in 2024, page: 53110.3390/toxins16120531
- 30.Author(s): Xin-Yu Lu, Hao-Ping Wu, Hao Ma, Hui Li, Jia Li, Yan-Ti Liu, Zheng-Yan Pan, Yi Xie, Lei Wang, Bin Ren, Guo-Kun LiuPublished in Analytical Chemistry by American Chemical Society (ACS) in 2024, page: 7959-797510.1021/acs.analchem.4c01639
- 31.Author(s): Kevin Mildau, Christoph Büschl, Jürgen Zanghellini, Justin J J van der HooftPublished in Bioinformatics by Oxford University Press (OUP) in 202410.1093/bioinformatics/btae584
- 32.Author(s): Yanghao Sheng, Jue Wang, Shao Liu, Yueping JiangPublished in Analytical Chemistry by American Chemical Society (ACS) in 202410.1021/acs.analchem.3c04746
- 33.Author(s): Samuel Goldman, Janet Li, Connor W. ColeyPublished in Analytical Chemistry by American Chemical Society (ACS) in 2024, page: 3419-342810.1021/acs.analchem.3c04654
- 34.Author(s): Su Ding, Vincent Grossi, Ellen C. Hopmans, Nicole J. Bale, Cristiana Cravo-Laureau, Jaap S. Sinninghe DamstéPublished in Proceedings of the National Academy of Sciences by Proceedings of the National Academy of Sciences in 202410.1073/pnas.2400711121
- 35.Author(s): Cristina F. Bazzano, Rafael de Felicio, Luiz Fernando Giolo Alves, Jonas Henrique Costa, Raquel Ortega, Bruna Domingues Vieira, Raquel Peres Morais-Urano, Luciana Costa Furtado, Everton L. F. Ferreira, Juliana R. Gubiani, Roberto G. S. Berlinck, Leticia V. Costa-Lotufo, Guilherme P. Telles, Daniela B. B. TrivellaPublished in Analytical Chemistry by American Chemical Society (ACS) in 2024, page: 7460-746910.1021/acs.analchem.3c05829
- 36.Author(s): Bodou Zhang, Sheng Li, Zhenzhen Liang, Yinling Wei, Jing Dong, Hongyan Wen, Lingli Guo, Xiaojiang Hao, Yu ZhangPublished in Food Science and Human Wellness by Tsinghua University Press in 202410.26599/fshw.2024.9250003
- 37.Author(s): Jingjing Liu, Chaohui Bao, Jiaxin Zhang, Zeguang Han, Hai Fang, Haitao LuPublished in Pharmacology & Therapeutics by Elsevier BV in 2024, page: 10871210.1016/j.pharmthera.2024.108712
- 38.Author(s): Joe Wandy, Ross McBride, Simon Rogers, Nikolaos Terzis, Stefan Weidt, Justin J. J. van der Hooft, Kevin Bryson, Rónán Daly, Vinny DaviesPublished in Frontiers in Molecular Biosciences by Frontiers Media SA in 202310.3389/fmolb.2023.1130781
- 39.Author(s): Eleni E. Litsa, Vijil Chenthamarakshan, Payel Das, Lydia E. KavrakiPublished in Communications Chemistry by Springer Science and Business Media LLC in 202310.1038/s42004-023-00932-3
- 40.Author(s): Guilin Hu, Minghua QiuPublished in Natural Product Reports by Royal Society of Chemistry (RSC) in 2023, page: 1735-175310.1039/d3np00025g
- 41.Author(s): Lifeng Liu, Xuxia Zhao, Xin Lv, Jiankang Mu, Ping ChengPublished in World Journal of Environmental Science and Engineering by International Science Group Inc. in 202310.57237/j.wjese.2023.02.006
- 42.Author(s): Mahnoor Zulfiqar, Luiz Gadelha, Christoph Steinbeck, Maria Sorokina, Kristian PetersPublished in Journal of Cheminformatics by Springer Science and Business Media LLC in 202310.1186/s13321-023-00695-y
- 43.Author(s): Chris D. McGann, William D. Barshop, Jesse D. Canterbury, Chuwei Lin, Wassim Gabriel, Jingjing Huang, David Bergen, Vlad Zabrouskov, Rafael D. Melani, Mathias Wilhelm, Graeme C. McAlister, Devin K. SchweppePublished in Journal of Proteome Research by American Chemical Society (ACS) in 2023, page: 2836-284610.1021/acs.jproteome.3c00085
- 44.Author(s): Niek F. de Jonge, Joris J. R. Louwen, Elena Chekmeneva, Stephane Camuzeaux, Femke J. Vermeir, Robert S. Jansen, Florian Huber, Justin J. J. van der HooftPublished in Nature Communications by Springer Science and Business Media LLC in 202310.1038/s41467-023-37446-4
- 45.Author(s): Yanghao Sheng, Ying Xue, Jue Wang, Shao Liu, Yueping JiangPublished in Analytical and Bioanalytical Chemistry by Springer Science and Business Media LLC in 2023, page: 3285-329310.1007/s00216-023-04708-5
- 46.Author(s): David Elser, David Pflieger, Claire Villette, Baptiste Moegle, Laurence Miesch, Emmanuel GaquerelPublished in Science Advances by American Association for the Advancement of Science (AAAS) in 202310.1126/sciadv.ade8984
- 47.Author(s): Nicholas J. Morehouse, Trevor N. Clark, Emily J. McMann, Jeffrey A. van Santen, F. P. Jake Haeckl, Christopher A. Gray, Roger G. LiningtonPublished in Nature Communications by Springer Science and Business Media LLC in 202310.1038/s41467-022-35734-z
- 48.Author(s): Qiong Yang, Hongchao Ji, Zhenbo Xu, Yiming Li, Pingshan Wang, Jinyu Sun, Xiaqiong Fan, Hailiang Zhang, Hongmei Lu, Zhimin ZhangPublished in Nature Communications by Springer Science and Business Media LLC in 202310.1038/s41467-023-39279-7
- 49.Author(s): Samuel Goldman, Jeremy Wohlwend, Martin Stražar, Guy Haroush, Ramnik J. Xavier, Connor W. ColeyPublished in Nature Machine Intelligence by Springer Science and Business Media LLC in 2023, page: 965-97910.1038/s42256-023-00708-3
- 50.Author(s): Timothy M.D. Ebbels, Justin J.J. van der Hooft, Haley Chatelaine, Corey Broeckling, Nicola Zamboni, Soha Hassoun, Ewy A. MathéPublished in Current Opinion in Chemical Biology by Elsevier BV in 2023, page: 10228810.1016/j.cbpa.2023.102288
Presentations
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1Video recordings
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48- 1.Author(s): Eszter Sas, Adrien Frémont, Emmanuel Gonzalez, Mathieu Sarrazin, Simon Barnabé, Michel Labrecque, Nicholas James Beresford Brereton, Frédéric Emmanuel PitrePublished by Cold Spring Harbor Laboratory in 202410.1101/2024.07.16.603755
- 2.Author(s): Niek de Jonge, David Joas, Lem-Joe Truong, Justin J.J. van der Hooft, Florian HuberPublished by Cold Spring Harbor Laboratory in 202410.1101/2024.03.25.586580
- 3.Author(s): Gabriel Asher, Jennifer M. Campbell, Jack Geremia, Timothy KassisPublished by American Chemical Society (ACS) in 202410.26434/chemrxiv-2024-k06gb-v2
- 4.Author(s): Wen-Chao Yu, Yan-Lei Yu, Bing-Cheng Dong, Ze-Yu Wang, Ao-Qi Du, Song-Wei Li, Buddha Bahadur Basnet, Xiao-Ze Bao, Xuanrong Sun, Xing-Nuo Li, Qi Xuan, Qihao Wu, Hong Wang, Bin WeiPublished by Elsevier BV in 202410.2139/ssrn.4968684
- 5.Author(s): Luis Quiros-Guerrero, Laurence Marcourt, Nathareen Chaiwangrach, Alexey Koval, Emerson Ferreira-Queiroz, Bruno David, Antonio Grondin, Vladimir Katanaev, Jean-Luc WolfenderPublished by American Chemical Society (ACS) in 202410.26434/chemrxiv-2024-96nz6
- 6.Author(s): Thomas O. Metz, Christine H. Chang, Vasuk Gautam, Afia Anjum, Siyang Tian, Fei Wang, Sean M. Colby, Jamie R. Nunez, Madison R. Blumer, Arthur S. Edison, Oliver Fiehn, Dean P. Jones, Shuzhao Li, Edward T. Morgan, Gary J. Patti, Dylan H. Ross, Madelyn R. Shapiro, Antony J. Williams, David S. WishartPublished by Cold Spring Harbor Laboratory in 202410.1101/2024.07.30.605945
- 7.Author(s): Gabriel Asher, Jennifer M. Campbell, Jack Geremia, Timothy KassisPublished by American Chemical Society (ACS) in 202410.26434/chemrxiv-2024-k06gb
- 8.Author(s): Olivier Auguste Kirchhoffer, Luis Quiros-Guerrero, Jahn Nitschke, Louis-Félix Nothias, Frédéric Burdet, Laurence Marcourt, Nabil Hanna, Florence Mehl, Bruno David, Antonio Grondin, Emerson Ferreira Queiroz, Marco Pagni, Thierry Soldati, Jean-Luc WolfenderPublished by American Chemical Society (ACS) in 202410.26434/chemrxiv-2024-zwx80
- 9.Author(s): Hongchao Ji, Ran Du, Qinliang Dai, Meifeng Su, Yaqing Lyu, Yanchun Peng, Jianbin YanPublished by Cold Spring Harbor Laboratory in 202410.1101/2024.05.30.596727
- 10.Author(s): Justin J.J. van der Hooft, Madeleine Ernst, Daniel Papenberg, Kyo Bin Kang, Iris F. Kappers, Marnix H. Medema, Pieter C. Dorrestein, Simon RogersPublished in Recent Advances in Polyphenol Research by Wiley in 2023, page: 139-16810.1002/9781119844792.ch5
- 11.Author(s): Thomas Butler, Abraham Frandsen, Rose Lightheart, Brian Bargh, Thomas Kerby, Kiana West, Joseph Davison, James Taylor, Christoph Krettler, TJ Bollerman, Gennady Voronov, Kevin Moon, Tobias Kind, Pieter Dorrestein, August Allen, Viswa Colluru, David HealeyPublished by American Chemical Society (ACS) in 202310.26434/chemrxiv-2023-vsmpx-v4
- 12.Author(s): Kas J. Houthuijs, Giel Berden, Udo F. H. Engelke, Vasuk Gautam, David S. Wishart, Ron A. Wevers, Jonathan Martens, Jos OomensPublished by American Chemical Society (ACS) in 202310.26434/chemrxiv-2023-5grq5
- 13.Author(s): Xiang Qian, Yiming Yang, Shuang Sun, Shuyuan Yang, Qin Yang, Xinqiong Lu, Xiaohao Wang, Quan Yu, Xingming HuoPublished by Research Square Platform LLC in 202310.21203/rs.3.rs-3445132/v1
- 14.Author(s): Yasuyuki ZushiPublished by Research Square Platform LLC in 202310.21203/rs.3.rs-2983844/v1
- 15.Author(s): Thomas Butler, Abraham Frandsen, Rose Lightheart, Brian Bargh, TJ Bollerman, Thomas Kerby, Kiana West, Gennady Voronov, Kevin Moon, Tobias Kind, Pieter Dorrestein, August Allen, Viswa Colluru, David HealeyPublished by American Chemical Society (ACS) in 202310.26434/chemrxiv-2023-vsmpx
- 16.Author(s): Thomas Butler, Abraham Frandsen, Rose Lightheart, Brian Bargh, James Taylor, TJ Bollerman, Thomas Kerby, Kiana West, Gennady Voronov, Kevin Moon, Tobias Kind, Pieter Dorrestein, August Allen, Viswa Colluru, David HealeyPublished by American Chemical Society (ACS) in 202310.26434/chemrxiv-2023-vsmpx-v3
- 17.Author(s): Arnaud Gaudry, Marco Pagni, Florence Mehl, Sébastien Moretti, Luis-Manuel Quiros-Guerrero, Adriano Rutz, Marcel Kaiser, Laurence Marcourt, Emerson Ferreira Queiroz, Jean-Robert Ioset, Antonio Grondin, Bruno David, Jean-Luc Wolfender, Pierre-Marie AllardPublished by American Chemical Society (ACS) in 202310.26434/chemrxiv-2023-sljbt
- 18.Author(s): Thomas Butler, Abraham Frandsen, Rose Lightheart, Brian Bargh, James Taylor, TJ Bollerman, Thomas Kerby, Kiana West, Gennady Voronov, Kevin Moon, Tobias Kind, Pieter Dorrestein, August Allen, Viswa Colluru, David HealeyPublished by American Chemical Society (ACS) in 202310.26434/chemrxiv-2023-vsmpx-v2
- 19.Author(s): Arnaud Gaudry, Marco Pagni, Florence Mehl, Sébastien Moretti, Luis-Manuel Quiros-Guerrero, Luca Cappelletti, Adriano Rutz, Marcel Kaiser, Laurence Marcourt, Emerson Ferreira Queiroz, Jean-Robert Ioset, Antonio Grondin, Bruno David, Jean-Luc Wolfender, Pierre-Marie AllardPublished by American Chemical Society (ACS) in 202310.26434/chemrxiv-2023-sljbt-v2
- 20.Author(s): David Elser, Florian Huber, Emmanuel GaquerelPublished by Cold Spring Harbor Laboratory in 202310.1101/2023.07.06.547963
- 21.Author(s): Marco VisaniPublished by Pensoft Publishers in 202310.3897/arphapreprints.e116230
- 22.Author(s): Thomas Harwood, Daniel G.C. Treen, Mingxun Wang, Wibe de Jong, Trent R. Northen, Benjamin P. BowenPublished by Cold Spring Harbor Laboratory in 202310.1101/2023.02.14.528550
- 23.Author(s): Krzysztof Jan Abram, Douglas McCloskeyPublished by Cold Spring Harbor Laboratory in 202310.1101/2023.06.01.543126
- 24.Author(s): Shipei Xing, Sam Shen, Banghua Xu, Tao HuanPublished by Cold Spring Harbor Laboratory in 202210.1101/2022.08.03.502704
- 25.Author(s): Niek F. de Jonge, Joris R. Louwen, Elena Chekmeneva, Stephane Camuzeaux, Femke J. Vermeir, Robert S. Jansen, Florian Huber, Justin J.J. van der HooftPublished by Cold Spring Harbor Laboratory in 202210.1101/2022.07.22.501125
- 26.Author(s): Wout Bittremieux, Nicole E. Avalon, Sydney P. Thomas, Sarvar A. Kakhkhorov, Alexander A. Aksenov, Paulo Wender P. Gomes, Christine M. Aceves, Andrés Mauricio Caraballo-Rodríguez, Julia M. Gauglitz, William H. Gerwick, Tao Huan, Alan K. Jarmusch, Rima F. Kaddurah-Daouk, Kyo Bin Kang, Hyun Woo Kim, Todor Kondić, Helena Mannochio-Russo, Michael J. Meehan, Alexey V. Melnik, Louis-Felix Nothias, Claire O’Donovan, Morgan Panitchpakdi, Daniel Petras, Robin Schmid, Emma L. Schymanski, Justin J. J. van der Hooft, Kelly C. Weldon, Heejung Yang, Shipei Xing, Jasmine Zemlin, Mingxun Wang, Pieter C. DorresteinPublished by Cold Spring Harbor Laboratory in 202210.1101/2022.05.15.490691
- 27.Author(s): David Elser, David Pflieger, Claire Villette, Baptiste Moegle, Laurence Miesch, Emmanuel GaquerelPublished by Cold Spring Harbor Laboratory in 202210.1101/2022.09.12.507566
- 28.Author(s): Mahnoor Zulfiqar, Luiz Gadelha, Christoph Steinbeck, Maria Sorokina, Kristian PetersPublished by Cold Spring Harbor Laboratory in 202210.1101/2022.10.17.512224
- 29.Author(s): Wout Bittremieux, Mingxun Wang, Pieter C. DorresteinPublished by American Chemical Society (ACS) in 202210.26434/chemrxiv-2022-hjtt2
- 30.Author(s): Wout Bittremieux, Robin Schmid, Florian Huber, Justin JJ van der Hooft, Mingxun Wang, Pieter C DorresteinPublished by Cold Spring Harbor Laboratory in 202210.1101/2022.06.01.494370
- 31.Author(s): Zhiwei Zhou, Mingdu Luo, Haosong Zhang, Yandong Yin, Yuping Cai, Zheng-Jiang ZhuPublished by Cold Spring Harbor Laboratory in 202210.1101/2022.06.02.494523
- 32.Author(s): Joris J. R. Louwen, Marnix H. Medema, Justin J. J. van der HooftPublished by Research Square Platform LLC in 202210.21203/rs.3.rs-1391827/v2
- 33.Author(s): Tao Huan, Shipei Xing, Sam Shen, Banghua XuPublished by Research Square Platform LLC in 202210.21203/rs.3.rs-1927294/v1
- 34.Author(s): Niek F. de Jonge, Kevin Mildau, David Meijer, Joris R. Louwen, Christoph Bueschl, Florian Huber, Justin J.J. van der HooftPublished by Research Square Platform LLC in 202210.21203/rs.3.rs-1662223/v1
- 35.Author(s): Gennady Voronov, Rose Lightheart, Abe Frandsen, Brian Bargh, Sarah E. Haynes, Elizabeth Spencer, Katherine E. Schoenhardt, Christina Davidson, Andre Schaum, Venkat R. Macherla, Erik DeBloois, David Healey, Tobias Kind, Pieter Dorrestein, Viswa Colluru, Thomas Butler, Marvin S. YuPublished by Cold Spring Harbor Laboratory in 202210.1101/2022.10.09.511482
- 36.Author(s): Joris J. R. Louwen, Marnix H. Medema, Justin J. J. van der HooftPublished by Research Square Platform LLC in 202210.21203/rs.3.rs-1391827/v1
- 37.Published by PeerJ in 202110.7287/peerj.11359v0.1/reviews/2
- 38.Author(s): Eleni Litsa, Vijil Chenthamarakshan, Payel Das, Lydia KavrakiPublished by American Chemical Society (ACS) in 202110.26434/chemrxiv-2021-6rdh6
- 39.Author(s): Florian Huber, Sven van der Burg, Justin J.J. van der Hooft, Lars RidderPublished by Cold Spring Harbor Laboratory in 202110.1101/2021.04.18.440324
- 40.Author(s): Wout Bittremieux, Kris Laukens, William Stafford Noble, Pieter C. DorresteinPublished by Cold Spring Harbor Laboratory in 202110.1101/2021.02.05.429957
- 41.Author(s): Svetlana Kutuzova, Christian Igel, Mads Nielsen, Douglas McCloskeyPublished by Cold Spring Harbor Laboratory in 202110.1101/2021.08.03.454944
- 42.Author(s): Tiago F. Leão, Mingxun Wang, Ricardo da Silva, Alexey Gurevich, Anelize Bauermeister, Paulo Wender P. Gomes, Asker Brejnrod, Evgenia Glukhov, Allegra T. Aron, Joris J. R. Louwen, Hyun Woo Kim, Raphael Reher, Marli F. Fiore, Justin J.J. van der Hooft, Lena Gerwick, William H. Gerwick, Nuno Bandeira, Pieter C. DorresteinPublished by Cold Spring Harbor Laboratory in 202110.1101/2021.10.05.463235
- 43.Author(s): Daniel G.C. Treen, Trent R. Northen, Benjamin P. BowenPublished by Cold Spring Harbor Laboratory in 202110.1101/2021.02.24.432767
- 44.Author(s): Arnaud Gaudry, Florian Huber, Louis-Félix Nothias, Sylvian Cretton, Marcel Kaiser, Jean-Luc Wolfender, Pierre-Marie AllardPublished by Cold Spring Harbor Laboratory in 202110.1101/2021.12.24.474089
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- 47.Author(s): Grímur Hjörleifsson Eldjárn, Andrew Ramsay, Justin J. J. van der Hooft, Katherine R. Duncan, Sylvia Soldatou, Juho Rousu, Rónán Daly, Joe Wandy, Simon RogersPublished by Cold Spring Harbor Laboratory in 202010.1101/2020.06.12.148205
- 48.Author(s): Florian Huber, Lars Ridder, Stefan Verhoeven, Jurriaan H. Spaaks, Faruk Diblen, Simon Rogers, Justin J.J. van der HooftPublished by Cold Spring Harbor Laboratory in 202010.1101/2020.08.11.245928
Contributors
Contact person
Adam Belloum
Netherlands eScience Center
Netherlands eScience Center
Netherlands eScience Center
Faruk Diblen
Netherlands eScience Center
Florian Huber
Hochschule Düsseldorf
Netherlands eScience Center
Jurriaan H. Spaaks
Netherlands eScience Center
JvdH
Justin J. J. van der Hooft
Wageningen University & Research
SR
Simon Rogers
University of Glasgow
Netherlands eScience Center
Related projects
Integrated omics analysis for small molecule-mediated host-microbiome interactions
Advancing our understanding of molecular mechanisms of health and disease
Updated 26 months ago
Finished