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PanVA

Variant Analysis within Pangenomes.

mentions

contributors

295 commitsLast commit ≈ 3 months ago11 stars1 fork

Description

This repository contains both the Frontend code and the API code for the PanVA application.

Keywords

API

Data Analysis

pangenomics

Programming languages

Vue 77%
TypeScript 19%
Python 2%
JavaScript 1%
Other 1%

License

GPL-3.0-only

</>Source code

Participating organisations

Reference papers

1.
Author(s): Astrid van den Brandt, Eef M. Jonkheer, Dirk-Jan M. van Workum, Huub van de Wetering, Sandra Smit, Anna Vilanova
Published in IEEE Transactions on Visualization and Computer Graphics by Institute of Electrical and Electronics Engineers (IEEE) in 2024, page: 4895-4909
10.1109/tvcg.2023.3282364

Mentions

1.
Author(s): Muhammad Bilal, Fabia Ursula Battistuzzi
Published in Reference Module in Life Sciences by Elsevier in 2025
10.1016/b978-0-443-15750-9.00139-7

Contributors

Contact person

Sandra Smit

Lead Applicant

0000-0001-5239-5321

FdV

Folkert de Vries

Software Developer

Sandra Smit

Lead Applicant

0000-0001-5239-5321

Related projects

Scaling up pangenomics for plant breeding

Delivering a pangenome approach that drastically improves the analytical power on plant data

Updated 16 months ago

Finished

Related software

PanTools

PanTools is a pangenomic toolkit for comparative analysis of large number of genomes. It is developed in the Bioinformatics Group of Wageningen University, the Netherlands. Please cite the relevant publication(s) from the list of publications if you use PanTools in your research.

Updated 18 months ago

42 3

PanTools-pipeline-v4

General purpose Snakemake pipeline for PanTools v4.

Updated 18 months ago

PanVA

Description

Participating organisations

Reference papers

Mentions

Book section1

Journal articles3

Contributors

Contact person

Sandra Smit

Lead Applicant

.logo-orcid_svg__st1{fill:#fff}0000-0001-5239-5321

Related projects

Scaling up pangenomics for plant breeding

Related software

PanTools

PanTools-pipeline-v4

0000-0001-5239-5321