Software | Research Software Directory

WEARDA

WEARDA: recording wearable sensor data for human activity monitoring.

embedded software
GPS
Human activity monitoring
+ 4

C
TeX

2

4

Xenon gRPC server

Run applications remotely via a gRPC interface.

High performance computing

Java

3

4

Network structures

A draft model with some useful code for creating different network structures using the Netlogo NW extension: small-world, preferential attachment, circular, star, wheel, lattice, random, nearest neighbours.

1

3

Artifact for the Paper "Fast Verified SCCs for Probabilistic Model Checking"

Correct-by-construction
Gabow
IRF
+ 13

3

BrazilClim: script to gauge-calibrate the surfaces

Bioclimatic variables
Brazil
land surface temperatures
+ 4

5

3

Code supporting the paper: Stability of a two-dimensional biomorphoelastic model for post-burn contraction

Burns
MATLAB
Morphoelasticity
+ 3

3

Code to produce the results of the publication: “Examining the Role of Intrinsic and Reflexive Contributions to Ankle Joint Hyper-Resistance Treated with Botulinum Toxin-A”

BoNT-A injections
Instrumented SPAT
Joint resistance
+ 2

1

3

Code underlying the publication: "Self-Supervised PPG Representation Learning Shows High Inter-Subject Variability"

Autoencoder
Human Activity Recognition
Inter-Subject Variability
+ 3

Python
Other
Markdown
+ 1

3

CoralModel: A Python-based model that resembles the biophysical interactions on a coral reef

biophysics
Coral Reef Ecology
hydrodynamics

1

3

Data and code underlying Chapter 4 of the PhD thesis "Advanced Magnetocaloric Regenerators for Heat Pump Applications"

active magnetocaloric regenerator
layered AMR
magnetocaloric heat pump
+ 5

Other
Python

4

3

Data underlying the publication: Fabrication and Characterization of Pneumatic Unit Cell Actuators

characterization
fabrication
haptic display
+ 4

Markdown

3

etv_scheduling

Code underlying the publication: An environmentally-aware dynamic planning of electric vehicles for aircraft towing considering stochastic aircraft arrival and departure times

Dynamic scheduling
Electric towing vehicles
Stochastic scheduling
+ 2

Python
Markdown
Other
+ 1

1

3

Fast Rotor Loss Calculations in Fractional-Slot Permanent Magnet Machines

COMSOL multiphysics software
Eddy current losses
Permanent magnet machine

1

3

Generics library for datatype-generic programming in Agda

Agda
Dependent Types
Generic Programming
+ 2

2

3

group-trip-planning

Code underlying the publication: When in Doubt! Understanding the Role of Task Characteristics on Peer Decision-Making with AI Assistance

Empirical Studies
Group Decision-Making
Human-AI Decision-Making
+ 5

Other
Python
JSON
+ 4

2

3

Script underlying the paper "On Robustly Convergent and Efficient Iterative Methods for Anisotropic Radiative Transfer"

acceleration
anisotropic
preconditioning
+ 3

3

scv_sparse_data

Code: Calculate Supply Chain Visibility with Sparse Data

sparse data
supply chain
supply chain visibility

Other
Jupyter Notebook
Python

1

3

Supplementary data for the paper 'From A to B with Ease: User-Centric Interfaces for Shuttle Buses'

Micro-mobility
Shuttle bus
User Interface
+ 1

5

3

Supplementary materials for the paper: On Senders’s Models of Visual Sampling Behavior

bandwidth
Computer simulation
replication
+ 2

2

3

AstronomicAL

An interactive dashboard for visualisation, integration and classification of data using Active Learning.

Active Learning
Classification
Data Analysis
+ 11

Python
TeX

1

3

Beyond the book

Measure the number of contributions to Wikipedia entries from individuals from different counties as a measure of cultural bias.

Text analysis & natural language processing

Jupyter Notebook
Python
JavaScript
+ 2

2

3

chimp-classifier

The Python package `junglesounds` is a machine learning pipeline for classifying bioacoustic data using machine learning. The pipeline is reusable for other settings and species or vocalization types as long as a certain amount of labeled data has been collected.

audio
Audio processing
bioacoustics
+ 2

Jupyter Notebook
Python
Shell

2

3

Emma

Emma is a project to create a platform for development of application for Spark and DockerSwarm clusters.

Big data

Shell
Scala
Python
+ 1

4

3

eOSSR

The eOSSR is the Python library to programmatically manage the ESCAPE OSSR.

jupyter-notebook
repository
research software
+ 2

Python
Dockerfile

4

3

Introduction to Geospatial Raster and Vector Data with Python

This lesson material shows how practical geospatial data analysis tasks can be carried out using Python

Data Analysis
geospatial
Image processing
+ 4

3

iReceptor Gateway

A Distributed Data Management System and Scientific Gateway for Mining Next Generation Sequence Data from Immune Responses.

immunogenomics
Immunology
iReceptor

PHP
Shell
Blade
+ 7

12

3

Lilio

A Python package for generating calendars to resample timeseries into training and target data for machine learning. Named after the inventor of the Gregorian Calendar.

AI
Preprocessing
S2S

Python
Shell

5

3

NEBULA

The NEBULA (Nuxt & eScience Based Universal Learning Application) framework can be used to create an easily maintainable, version-controllable, web-based lesson collection. It uses Nuxt.js and Vue.js.

teaching
web

Vue
TypeScript
SCSS
+ 1

3

s2spy

A high-level python package integrating expert knowledge and artificial intelligence to boost sub-seasonal to seasonal (S2S) forecasting.

AI
S2S

Python
Shell

6

3

SalientDetector-matlab

If you want to automate object detection or image photo-identification tasks in an easy way with open MATLAB software, the SalientDetector-MATLAB is right for you

Image processing

MATLAB

1

3

SalientDetector-python

If you want to automate your object detection or photo-identification image tasks in an easy way with free open-source software, the SalientDetector-Python is the tool for you

Image processing

Jupyter Notebook
Python
Makefile

2

3

SlicerRT

SlicerRT allows users to analyze spatio-temporal accumulation of the therapeutic dosage (radiation, thermal, etc.). Tools include dose visualization, quantitative metrics computation, comparison, and import/export to DICOM format.

C++
Python
CMake
+ 1

3

Revisited Via Appia

Create visual storylines that involve media like images and videos embedded in a 3D environment with efficient Pointcloud data directly from the web browser.

cultural heritage
Digital Twins
gis
+ 2

JavaScript
HTML
Vue
+ 3

2

3

Importing a Roman Transport network

Use open Roman datasets via and import them into a NetLogo model, using the ORBIS dataset (http://orbis.stanford.edu/) to create a set of Roman settlements and major routes between them.

1

2

Out of Africa - Conditional isotropic diffusion

A reimplementation of the classical study by Young and Bettinger (1992) investigating the possible drivers behind the Out of Africa dispersal of modern humans.

4

2

Landscape and Land Cover Generation

This algorithm generates landscapes and landcovers in contiguous zones. Users can define different landscape types, landcovers and rules for settlement placement in the setup procedure. It is designed to allow flexible configuration of environmental and social parameters.

1

2

SyGMa

SyGMa provides fast and lightweight predictions of human metabolites to support discovery scientists design better and safer drugs

Workflow technologies

Python

2

agda-core

Code underlying the publication: Building a Correct-By-Construction Type Checker for a Dependently Typed Core Language

core language
Dependent Types
type-checking
+ 2

Other
Haskell
YAML
+ 1

2

Code supporting the paper: High-speed predictions of post-burn contraction using a neural network trained on 2D-finite element simulations

Feedforward neural network
Machine learning
Monte Carlo simulations
+ 2

3

2

Code to produce the results of the publication: “Reducing the Soleus Stretch Reflex with Conditioning: Exploring Game- and Impedance-based Biofeedback”

Electromyography (EMG)
Gamification
operant conditioning
+ 2

1

2

Code underlying the publication: Exploiting Learned Symmetries in Group Equivariant Convolutions

equivariance
equivariant convolutions
separable convolutions

Python
Other
Markdown

2

Code underlying the publication: "Humans disagree with the IoU for measuring object detector localization error."

Human preference
Intersection over Union (IoU)
Object detection

Jupyter Notebook
Other
Markdown

3

2

Dataset of human gait in a domestic setup collected with an LFMCW MIMO radar

doppler signature
fmcw radar
gait
+ 4

4

2

Data underlying the publication/thesis chapter: Scale Learning in Scale-Equivariant Convolutional Networks

computer vision
Convolutional neural network (CNN)
equivariance
+ 3

Jupyter Notebook
Python
Markdown
+ 5

6

2

Dynamic-Graph-Decomposition

Code underlying the publication: Tensor Graph Decomposition for Temporal Networks

decomposition
dynamic graphs
graph signal processing
+ 1

Matlab
Other

2

Multistage-PINN

Code underlying the publication: Multistage physics informed neural network for solving coupled multiphysics problems in material degradation and fluid dynamics

Asphalt aging
Multiphysics modeling
Multistage learning
+ 2

Jupyter Notebook
Markdown
Other

4

2

OFF framework, code underlying the publication A dynamic open-source model to investigate wake dynamics in response to wind farm flow control strategies

dynamic parametric wake model
surrogate wake model
wind farm flow control
+ 1

Other
YAML
HTML
+ 7

2

oraqle

Oraqle: A Depth-Aware Secure Computation Compiler

arithmetization
compiler
cryptography
+ 1

Python
Other
Markdown
+ 4

1

2

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