Software | Research Software Directory

Uncertainty Specification and Analysis for Thermosphere Observations

Accelerometer
GNSS tracking
Mass density
+ 2

(C)
(C++)
(Fortran)
+ 3

1

8

Clustering Geo-data Cubes

Tool to perform cluster analysis of multi-dimensional geospatial data, running on local or distributed systems.

Big data
geospatial
Machine learning
+ 1

("Jupyter Notebook")
(Python)
(TeX)

7

8

nlppln

A flexible solution to build text mining workflows that allows you to quickly combine Natural Language Processing tools from different sources.

Text analysis & natural language processing

("Common Workflow Language")
(Dockerfile)
(Python)

2

8

COVID-19 Piedmont

COVID-19 Surveillance Data Modelling and Management Pipeline in Piedmont.

Computational Epidemiology
COVID-19
COVID-19 Data
+ 14

(Julia)

2

8

PuReGoMe

Analyzes social media messages for polarity and stance towards governmental COVID-19 measures

Machine learning
Social media

("Jupyter Notebook")
(Python)
(Shell)

3

8

pypfilt

A Sequential Monte Carlo (SMC, or "particle filter") Python package for online model estimation and probabilistic forecasting.

Bayesian Inference
Forecasting
Sequential Monte Carlo

1

8

recipy

Effortless provenance tracking in Python

Inter-operability & linked data
Optimized data handling

(CSS)
(Gherkin)
(HTML)
+ 2

2

8

Code for Detecting Anomalous Misconfigurations in AWS Identity and Access Management Policies

Identity and Access Management
Misconfiguration Detection
Security

(Markdown)
(Other)
(Python)

4

7

Code supporting the paper: Sensitivity and feasibility of a one-dimensional morphoelastic model for post-burn contraction

Burns
Feasibility
MATLAB
+ 4

3

7

DALES v4.2 modified for ammonia plume dispersion and blending-distance estimations

Ammonia
Atmospheric ammonia
blending distance
+ 7

4

7

etv_scheduling

Code underlying the publication: An environmentally-aware dynamic planning of electric vehicles for aircraft towing considering stochastic aircraft arrival and departure times

Dynamic scheduling
Electric towing vehicles
Stochastic scheduling
+ 2

(large-text-file)
(Markdown)
(Other)
+ 1

1

7

MATLAB script and COMSOL models of the article "An efficient multiscale method for subwavelength transient analysis of acoustic metamaterials"

Equivalent fluid model
Homogenisation
Locally resonant acoustic metamaterials
+ 1

(Markdown)
(Matlab)
(Other)

4

7

SBSL

Data and code underlying the publication: Overcoming Selection Bias in Synthetic Lethality Prediction

anti-cancer therapeutics
computational prediction
gene dependency
+ 3

3

7

Software supporting the publication: Background Electromagnetic Noise Received via Ionospheric Propagation in a Remote Rural Location in Spain (set 1)

ambient noise
electromagnetic noise
ionosphere
+ 3

4

7

Source code of the SWAN model: Free Infragravity Waves in the North Sea

coastal waters
Infragravity waves
inland waters
+ 3

3

7

sse-akf-directional-waves-pem

Code underlying the publication: Unidirectional and multi-directional wave estimation from ship motions using an Adaptive Kalman Filter with the inclusion of varying forward speed

Adaptive Kalman filter
Sea state estimation
Ship motion responses
+ 1

(Markdown)
(Other)
(Python)

1

7

Climate Rapid Evaluation Framework

Rapid Evaluation Framework for climate simulations

Big data
Climate modeling

(Dockerfile)
("Go Template")
(Jinja)
+ 4

12

7

ece2cmor3

Process EC-Earth output to publish for CMIP6

Big data
High performance computing
Optimized data handling

(Jinja)
(Python)
(Shell)

2

7

jaspProcess

A JASP implementation of the PROCESS macro for SPSS

Data Analysis
Statistics
Visualization

(QML)
(R)

2

7

MultilayerGraphs.jl

A Julia package for the creation, manipulation and analysis of the structure, dynamics and functions of multilayer graphs.

Graphs
Graph Theory
Hierarchical Graphs
+ 10

(Julia)

2

7

PanVA

Variant Analysis within Pangenomes.

API
Data Analysis
pangenomics

(CSS)
(Dockerfile)
(HTML)
+ 6

2

7

Result Assessment Tool (RAT)

The Result Assessment Tool (RAT) is a free, open-source research toolbox for collecting, analyzing, and evaluating search results.

computer science
Data Analysis
Information Retrieval
+ 6

(CSS)
("Go Template")
(HTML)
+ 5

5

7

SPOT

SPOT is an interactive visualization tool for multi-dimensional data. It allows quick analysis of complex datasets and easy identification of correlations between variables.

Big data
Visualization

(CSS)
(Dockerfile)
(JavaScript)
+ 2

7

xtas

the eXtensible Text Analysis Suite

Text analysis & natural language processing

(Java)
(Python)
(Shell)

2

7

Code and data belonging to the publication "Data-Driven LIDAR Feedforward Predictive Wind Turbine Control"

Data-driven control
Feedforward Control
Predictive Control
+ 2

(Markdown)
(Matlab)
(Other)

4

6

Code complementing the paper "Feasibility Analysis of a Self-Reinforcing Electroadhesive Rotational Clutch"

Clutch
Electroadhesion
self-reinforcement
+ 2

3

6

Code for the paper "Synergizing cycling and transit: Strategic placement of cycling infrastructure to enhance job accessibility"

code
cycling infrastructure
job accessibility

1

6

Combining-Deeb-Learning-with-Uncertinity

Code and results underlying the publication: Combining Deep Neural Networks and Gaussian Processes for Asphalt Rheological Insights

Asphalt binder
Asphalt mastic
Gaussian process
+ 3

("Jupyter Notebook")
(Markdown)
(Other)
+ 1

4

6

CoralModel: A Python-based model that resembles the biophysical interactions on a coral reef

biophysics
Coral Reef Ecology
hydrodynamics

1

6

Data/software underlying the publication: Robust quantum-network memory based on spin qubits in isotopically engineered diamond

distributed quantum computation
entanglement distillation

12

6

group-trip-planning

Code underlying the publication: When in Doubt! Understanding the Role of Task Characteristics on Peer Decision-Making with AI Assistance

Empirical Studies
Group Decision-Making
Human-AI Decision-Making
+ 5

(CSS)
(HTML)
(JavaScript)
+ 4

2

6

Learning_on_SCs

Code underlying: Hodge-Aware Convolutional Learning on Simplicial Complexes

Hodge theorem
neural networks
simplicial complexes

(Markdown)
(Other)
(Python)
+ 1

1

6

MATLAB scripts created during the work on "Design of experiments: a statistical tool for PIV uncertainty quantification"

Design of Experiement (DOE)
Particle Image Velocimetry
systematic uncertainty
+ 1

2

6

np_heating

Code for the modeling of heating around plasmonic core–shell nanoparticles

Heat transfer
Photothermal effect
Plasmonic nanoparticles
+ 1

(Markdown)
(Other)
(Python)

2

6

Script for: AID-PRIGSHARE: Automation of Indicator Development for Green Space Health Research in QGIS

buffer
gis
greenness
+ 2

(Markdown)
(Other)
(Python)

1

6

eEcology Annotation Tool

Visualize and annotate GPS measurements of bird movements.

Inter-operability & linked data
Visualization

("API Blueprint")
(CSS)
(Dockerfile)
+ 5

1

6

Lightning

Lightning: Fast data processing using GPUs on distributed platforms

Big data
GPU
High performance computing

(C++)
(Python)
(Rust)

2

6

PSSMGen

Generates consistent PSSM and PDB files for protein-protein complexes

Big data
High performance computing
Optimized data handling

(Makefile)
(Python)

2

6

rWikiPathways

Use this package to interface with the WikiPathways API. It provides programmatic access to WikiPathways content in multiple data and image formats, including official monthly release files and convenient GMT read/write functions.

bioinformatics
WikiPathways

(HTML)
(R)
(TeX)

2

6

sv-channels

Genome-wide detection of structural variants using deep learning

Machine learning

("Jupyter Notebook")
(Python)
(R)
+ 1

4

6

TulipaEnergyModel

This package provides an optimization model for the electricity market and its coupling with other energy sectors. The objective is to determine the optimal investment and operation decisions for different types of assets.

Energy system analysis
Energy system modelling
Integrated energy systems
+ 4

(Julia)
(Python)
(Ruby)
+ 2

9

6

Reference evapotranspiration (FAO-56)

Calculate a daily value of reference evapotranspiration, useful for vegetation (incl. crop) models. The module code is based on FAO-56 Penman-Monteith method.

1

5

3D Slicer

3D Slicer is a free, open source software for visualization, processing, segmentation, registration, and analysis of medical, biomedical, and other 3D images and meshes; and planning and navigating image-guided procedures.

3D
3DSlicer
Extension
+ 7

(C)
(C++)
(CMake)
+ 5

4

5

AutoEncodersDLSCA

Code underlying the publication: Autoencoder-enabled model portability for reducing hyperparameter tuning efforts in side-channel analysis

Autoencoders
Hyperparameter Tuning
Portability
+ 3

(Markdown)
(Other)
(Python)

1

5

Automated xy calibration for 3D printers using a scanner

3D printer
calibration
FDM
+ 11

3

5

Code and data supporting the publication: ZIMFLUX: Single molecule localization microscopy with patterned illumination in 3D

modulated excitation
SMLM
Super-Resolution Microscopy
+ 2

(C)
(C#)
(C++)
+ 7

8

5

Code supporting the paper: Sensitivity of a two-dimensional biomorphoelastic model for post-burn contraction

burn
cell proliferation
MATLAB
+ 4

4

5

Code supporting the paper: Stability of a one-dimensional morphoelastic model for post-burn contraction

Burns
MATLAB
Morphoelasticity
+ 3

3

5