Software | Research Software Directory

Code supporting the paper: A Bayesian finite-element trained machine learning approach for predicting post-burn contraction

Feed-forward neural network
Machine learning
MATLAB
+ 5

3

9

Data underlying the publication: Fabrication and Characterization of Pneumatic Unit Cell Actuators

characterization
fabrication
haptic display
+ 4

Markdown

3

9

group-trip-planning

Code underlying the publication: When in Doubt! Understanding the Role of Task Characteristics on Peer Decision-Making with AI Assistance

Empirical Studies
Group Decision-Making
Human-AI Decision-Making
+ 5

CSS
HTML
JavaScript
+ 4

2

9

Hydrodynamic Analysis of Marine Structures-Marine Renewable Energies Lab (HAMS-MREL)

BIEM
HAMS
HAMS-MREL
+ 4

5

9

MATLAB scripts created during the work on "Multi-Δt approach for peak-locking error correction and uncertainty quantification in PIV"

PIV (Particle Image Velocimetry)
Uncertainty Quantification

3

9

Numerical model configurations for "A synthetic spring-neap tidal cycle for long-term morphological modelling"

Delft3D-FM
geomorphology;
modelling estimates

4

9

Sample dataset and software for FAST-EM array tomography

array tomography
FAST-EM
Image processing
+ 1

10

9

SBSL

Data and code underlying the publication: Overcoming Selection Bias in Synthetic Lethality Prediction

anti-cancer therapeutics
computational prediction
gene dependency
+ 3

3

9

scv_sparse_data

Code: Calculate Supply Chain Visibility with Sparse Data

sparse data
supply chain
supply chain visibility

Jupyter Notebook
Other
Python

1

9

Software and data underlying the publication: Faithful Model Explanations through Energy-Constrained Conformal Counterfactuals

Classification and Regression
Deep Generative Models & Autoencoders
Humanities & Computational Social Science
+ 1

JavaScript
JSON
Julia
+ 6

3

9

Bacting

Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.

bioinformatics
Cheminformatics

Java
TeX

1

9

orbitN

Symplectic integrator for near-Keplerian planetary systems

astronomical solution
astronomy
N-body
+ 2

1

9

pdb2sql

Fast and versatile Python package that leverages SQL queries to parse, manipulate and process biomolecular structure files. The structure files should be in the PDB format and are available on www.rcsb.org.

Big data
Optimized data handling

Makefile
Python
TeX

2

9

PuReGoMe

Analyzes social media messages for polarity and stance towards governmental COVID-19 measures

Machine learning
Social media

Jupyter Notebook
Python
Shell

3

9

WRFpy

WRFpy is a python application that provides an easy way to set up, run, and monitor Weather Research and Forecasting simulations

Data Simulation
python

Python

4

9

Xenon command line interface

A command line interface for the Xenon library that allows you to use remote machines to do your computations.

High performance computing

Batchfile
Common Workflow Language
Dockerfile
+ 2

2

9

Code for Detecting Anomalous Misconfigurations in AWS Identity and Access Management Policies

Identity and Access Management
Misconfiguration Detection
Security

Markdown
Other
Python

4

8

Shoreline Evolution Model and Appendix A - Supplementary data to the manuscript Challenges and new strategies in assessing multidecadal shore platform sandy beach evolution from aerial imagery

beach change
beach toe
beach volume
+ 4

4

8

sse-akf-directional-waves-pem

Code underlying the publication: Unidirectional and multi-directional wave estimation from ship motions using an Adaptive Kalman Filter with the inclusion of varying forward speed

Adaptive Kalman filter
Sea state estimation
Ship motion responses
+ 1

Markdown
Other
Python

1

8

Uncertainty Specification and Analysis for Thermosphere Observations

Accelerometer
GNSS tracking
Mass density
+ 2

C
C++
Fortran
+ 3

1

8

Clustering Geo-data Cubes

Tool to perform cluster analysis of multi-dimensional geospatial data, running on local or distributed systems.

Big data
geospatial
Machine learning
+ 1

Jupyter Notebook
Python
TeX

7

8

Climate Rapid Evaluation Framework

Rapid Evaluation Framework for climate simulations

Big data
Climate modeling

CSS
Dockerfile
Go Template
+ 6

12

8

nlppln

A flexible solution to build text mining workflows that allows you to quickly combine Natural Language Processing tools from different sources.

Text analysis & natural language processing

Common Workflow Language
Dockerfile
Python

2

8

COVID-19 Piedmont

COVID-19 Surveillance Data Modelling and Management Pipeline in Piedmont.

Computational Epidemiology
COVID-19
COVID-19 Data
+ 14

Julia

2

8

pypfilt

A Sequential Monte Carlo (SMC, or "particle filter") Python package for online model estimation and probabilistic forecasting.

Bayesian Inference
Forecasting
Sequential Monte Carlo

1

8

recipy

Effortless provenance tracking in Python

Inter-operability & linked data
Optimized data handling

CSS
Gherkin
HTML
+ 2

2

8

SPOT

SPOT is an interactive visualization tool for multi-dimensional data. It allows quick analysis of complex datasets and easy identification of correlations between variables.

Big data
Visualization

CSS
Dockerfile
JavaScript
+ 2

7

8

Trustchain

Trustchain is a decentralized approach to public key infrastructure designed for application to digital identity. Based on the W3C standards for decentralized identifiers (DID) and verifiable credentials (VC), it enables the creation of chains of trustworthy DIDs between recognizable legal entities.

Decentralized public key infrastructure
Digital identity
Verifiable credentials

CSS
HTML
Rust
+ 1

6

8

Code and data belonging to the publication "Data-Driven LIDAR Feedforward Predictive Wind Turbine Control"

Data-driven control
Feedforward Control
Predictive Control
+ 2

Markdown
Matlab
Other

4

7

Code supporting the paper: Sensitivity and feasibility of a one-dimensional morphoelastic model for post-burn contraction

Burns
Feasibility
MATLAB
+ 4

3

7

Code underlying the publication: "Self-Supervised PPG Representation Learning Shows High Inter-Subject Variability"

Autoencoder
Human Activity Recognition
Inter-Subject Variability
+ 3

JSON
Markdown
Other
+ 1

3

7

CoralModel: A Python-based model that resembles the biophysical interactions on a coral reef

biophysics
Coral Reef Ecology
hydrodynamics

1

7

DALES v4.2 modified for ammonia plume dispersion and blending-distance estimations

Ammonia
Atmospheric ammonia
blending distance
+ 7

4

7

etv_scheduling

Code underlying the publication: An environmentally-aware dynamic planning of electric vehicles for aircraft towing considering stochastic aircraft arrival and departure times

Dynamic scheduling
Electric towing vehicles
Stochastic scheduling
+ 2

large-text-file
Markdown
Other
+ 1

1

7

MATLAB script and COMSOL models of the article "An efficient multiscale method for subwavelength transient analysis of acoustic metamaterials"

Equivalent fluid model
Homogenisation
Locally resonant acoustic metamaterials
+ 1

Markdown
Matlab
Other

4

7

Software supporting the publication: Background Electromagnetic Noise Received via Ionospheric Propagation in a Remote Rural Location in Spain (set 1)

ambient noise
electromagnetic noise
ionosphere
+ 3

4

7

ece2cmor3

Process EC-Earth output to publish for CMIP6

Big data
High performance computing
Optimized data handling

Jinja
Python
Shell

2

7

jaspProcess

A JASP implementation of the PROCESS macro for SPSS

Data Analysis
Statistics
Visualization

QML
R

2

7

Lightning

Lightning: Fast data processing using GPUs on distributed platforms

Big data
GPU
High performance computing

C++
Python
Rust

2

7

MultilayerGraphs.jl

A Julia package for the creation, manipulation and analysis of the structure, dynamics and functions of multilayer graphs.

Graphs
Graph Theory
Hierarchical Graphs
+ 10

Julia

2

7

Result Assessment Tool (RAT)

The Result Assessment Tool (RAT) is a free, open-source research toolbox for collecting, analyzing, and evaluating search results.

computer science
Data Analysis
Information Retrieval
+ 6

CSS
Go Template
HTML
+ 4

5

7

xtas

the eXtensible Text Analysis Suite

Text analysis & natural language processing

Java
Python
Shell

2

7

AutoEncodersDLSCA

Code underlying the publication: Autoencoder-enabled model portability for reducing hyperparameter tuning efforts in side-channel analysis

Autoencoders
Hyperparameter Tuning
Portability
+ 3

Markdown
Other
Python

1

6

Code and data supporting the publication: ZIMFLUX: Single molecule localization microscopy with patterned illumination in 3D

modulated excitation
SMLM
Super-Resolution Microscopy
+ 2

C
C#
C++
+ 7

8

6

Code complementing the paper "Feasibility Analysis of a Self-Reinforcing Electroadhesive Rotational Clutch"

Clutch
Electroadhesion
self-reinforcement
+ 2

3

6

Code for the paper "Synergizing cycling and transit: Strategic placement of cycling infrastructure to enhance job accessibility"

code
cycling infrastructure
job accessibility

1

6

Code for the publication: Parametric excitation and friction modulation for a forced 2-dof system

effective friction
Friction-induced oscillations
Negative damping
+ 2

1

6

Combining-Deeb-Learning-with-Uncertinity

Code and results underlying the publication: Combining Deep Neural Networks and Gaussian Processes for Asphalt Rheological Insights

Asphalt binder
Asphalt mastic
Gaussian process
+ 3

Jupyter Notebook
Markdown
Other
+ 1

4

6