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Arpra

Arpra is a C library for analyzing the propagation of numerical error in arbitrary precision IEEE-754 floating-point computations.

Affine Arithmetic
Arbitrary Precision
Interval Arithmetic
+ 2

C
Makefile
M4

asreview-simulation

Command line interface to simulate an ASReview analysis using a variety of prior sampling strategies, classifiers, feature extractors, queriers, balancers, and stopping rules, all of which can be configured to run with custom parameterizations.

AI
ASReview
Automated Systematic Review
+ 4

Python

asrlitcompare

A tool written in rmarkdown for assessing the level of agreement between two raters following screening in ASReview. Users only need the two .csv files downloaded from ASReview, and the tool will automatically compile a summary report as an HTML file, viewable in your web browser.

ASReview
inter-rater reliability
literature screening
+ 1

HTML
C++
JavaScript
+ 14

Atlascine

Atlascine is an open-source, online mapping platform dedicated to bringing stories and maps closer together. This tool combines multimedia storytelling with digital mapping technologies to enable researchers to create, interact with and study spatial relationships within and between stories.

atlas
geovisualization
Mapping stories
+ 3

JavaScript
CSS
HTML

AttentionLayer.jl

Implements the Attention mechanism in Julia as a modular Lux layer

Julia Package
Machine learning
Scientific machine learning

Julia

haddock3-webapp

Web app to build haddock3 configuration and run it.

TypeScript
CSS
JavaScript
+ 2

i-VRESSE bartender

Bartender is a middleware web service to schedule jobs on various infrastructures.

Workflow technologies

Python
Dockerfile
Mako

BestieTemplate.jl

BestieTemplate.jl is a template focused on best practices for package development in Julia.

best practices
julia
template

Julia

BIOMERO

a scalable and extensible image analysis framework

biaflows
bioimaging
biomero
+ 9

Python
Shell
Dockerfile

bird-cloud-gnn

bird-cloud-gnn is a Python package that helps generate a graph representation from point cloud data and fits graph neural networks for classification problem

Classification
Graph Neural Network
Machine learning
+ 2

Python

BlueObelisk Euclid

A library of numeric, geometric and XML routines

Java
HTML

boatswain

Boatswain is a simple build system for docker images. It is especially useful when you have multiple docker images that depend on each other.

containers
docker

Python
Dockerfile

BridgeDbR

R package for the BridgeDb Java library making identifier mapping functionality available in the R environment.

persistent identifiers
Statistics

R
TeX
HTML

BridgeDb Webservice

REST API for identifier mapping

persistent identifiers
REST API
webservice

Java
HTML
JavaScript
+ 1

c3s-magic-wps

Web Processing Service for Climate Data Analysis in the MAGIC project.

Python
Makefile
Shell
+ 1

Canadian Advanced Network for Astronomical Research (CANFAR)

The Canadian Advanced Network for Astronomy Research (CANFAR) is a consortium that serves data-intensive storage, access, and processing needs of university groups and centers engaged in astronomy research.

authenticated
CANFAR
condor
+ 6

Canadian Writing Research Collaboratory (CWRC)

CWRC aims to make digital research methods broadly accessible, and to develop an active community of researchers engaged in exploring the potential of collaboration online.

Canadian culture & history
cultural studies
digital humanities
+ 1

JavaScript
PHP
HTML
+ 16

CanDIG CHORD

CHORD is a project to build a federated, Canadian, national data service for privacy- sensitive genomic and related health data. It allows the technologies and services being built by CanDIG and its international partners to be made available to the Canadian health research community more broadly.

CanDIG
GA4GH
genomics

Python
Lua
Shell

CanGeo Project

The goal of this project is to provide a web service providing inland waterbodies initially available on GeoBase and updated using the most recent Landsat-8 imagery.

canada
GeoRSS
imagery
+ 7

CanWIN

CanWIN (Canadian Watershed Information Network) is the data centre for the Centre for Earth Observation Science (CEOS). We support research and education, and inform management, policy and evidence based decision-making from the Nelson River Watershed to the Arctic.

Arctic
geospatial
metadata
+ 4

Carbon Budget Explorer (CABE)

Web application to visualize countries' carbon emission pathways under various views on fairness.

Svelte
TypeScript
Python
+ 3

caselawnet

Caselawnet constructs citation networks from collections of Dutch case law.

Big data

Jupyter Notebook
Python
HTML
+ 1

CAT

CAT is a collection of tools designed for the construction of various chemical compounds.

High performance computing

Python
Shell

ccglib

The Complex CUDA GEMM Library (ccglib) provides mixed-precision matrix-matrix multiplication kernels for complex data.

CUDA
GPU
High performance computing
+ 1

CDF2Medmij-Mapping-tool

The CDF2Medmij-Mapping-tool facilitates the seamless transformation of cohort data into MedMij-compliant FHIR formats, enabling the harmonization of diverse datasets within a federated learning infrastructure.

TypeScript
JavaScript
HTML
+ 2

Ceiba

Ceiba and its command-line interface Ceiba-cli solve the problem of computing, storing, and securely sharing computationally expensive simulation results.

Optimized data handling

Python
TeX
Shell
+ 1

ceiba-cli

command line interface to interact to interact with the ceiba web server

Optimized data handling

Python

Cerise

Cerise is a service for running CWL workflows on HPC resources. You add software, tool descriptions, and connection information, then your user runs workflows whenever they want.

High performance computing
Optimized data handling
Workflow technologies

Python
Common Workflow Language
Dockerfile
+ 2

cerulean

A Python 3 library for talking to HPC clusters and supercomputers.

High performance computing
SFTP
SLURM
+ 2

Python
Shell
Dockerfile

Cesium-ncWMS

Web Application that visualizes data stored in the NetCDF format on a globe.

Visualization

JavaScript
HTML
CSS
+ 1

cffconvert GitHub Action

GitHub action to validate CITATION.cff files, and convert to other citation formats using the dockerized version of cffconvert

CHAMP-EU

The Cornell-Holland Ab-initio Materials Package (CHAMP) is a quantum Monte Carlo suite of programs for electronic structure calculations. The code is developed by Claudia Filippi and Saverio Moroni, with significant contributions by Ravindra Shinde, N. Renaud, V. Azizi, E. Landinez, and S. Shepard.

Chemistry
High performance computing
Physics
+ 1

C
Fortran
Nemerle
+ 16

check-deps

This Python script checks whether a given set of software dependencies is met. This script itself is completely stand-alone and depends only on Python being installed. You may include this script along with a `dependencies.ini` in a project that has a diverse set of dependencies.

Dependency Hell
python
Workflow technologies

Python
CSS
Awk
+ 2

Chemical Analytics Platform

Chemical Analytics Platform is a freely available Virtual Machine encompassing tools, databases, and KNIME workflows.

Workflow technologies

Shell
Smarty

Cityblocks

Python utility to generate local climate zone (LCZ) tiles for rendering in 3D in QGIS

QML
Python

CLASS-web

Implementation of the Chemistry Land-surface Atmosphere Soil Slab (CLASS) model that runs entirely in the browser. For more information on CLASS, see https://classmodel.github.io/.

web service

TypeScript
JavaScript
CSS
+ 1

cleanX

CleanX is an open-source python library for exploring, cleaning and augmenting large datasets of X-rays, or certain other types of radiological images.

Image processing
Machine learning

Jupyter Notebook
Python
TeX
+ 3

ClinDIG

ClinDIG provides a federated data management and analysis solution for clinical and genomic data while to provide opportunity for distributed analysis centred on protecting patient privacy.

clinical
federated
genomics
+ 1

Python
Shell
Smarty
+ 5

CMLXOM

Java library for working with Chemical Markup Language files.

Chemical Markup Language
Chemistry
XML

Java
XSLT
HTML
+ 1

Compass-school

This Python implementation tries to model school choice and resulting school segregation based on the work of Schelling (1971) and Stoica & Flache (2014).

Agent-based modeling

Python
HTML

Compas Toolkit

The Compas Toolkit is a high-performance C++ library offering GPU-accelerated functions for use in quantitative MRI research.

GPU
High performance computing
MRI

Cuda
C++
Julia
+ 4

ConvolutionalNeuralOperators.jl

Julia package to implement Convolutional Neural Operators

Julia Package
Machine learning
Scientific machine learning

Julia

CoupledNODE

CoupledNODE.jl is a SciML repository that extends NODEs (Neural Ordinary Differential Equations) to C-NODEs (Coupled Neural ODEs), providing a data-driven approach to modelling solutions for multiscale systems when exact solutions are not feasible.

Julia Language
Julia Package
Machine learning
+ 1

Julia
Shell

CRiSp

CRiSp (City River Spaces) provides tools to automate the morphological delineation of riverside urban areas.

Data Analysis
geospatial
R
+ 1

CrowdED

CrowdED is a two-staged statistical guideline for optimal crowdsourcing experimental design in order to a-priori estimate optimal workers and tasks' assignment to obtain maximum accuracy on all tasks.

Citizen Science
Crowdsourcing
Data Simulation

Python
R
Dockerfile

cudawrappers

The cudawrappers library is a C++ wrapper for the Nvidia C libraries such as the CUDA driver, NVRTC, and cuFFT.

accelerators
CUDA
GPU

C++
CMake
Python
+ 1

cvasl

This library allows exploration and analyses of neuroimaging datsets. The software was developed to allow implementation of multiple large data harmonization and machine learning algorithms over neuroradiology datasets. The core algorithms are implemented in Python.

Jupyter Notebook
Python
R
+ 3

cwltool

The reference implementation of the Common Workflow Language standards

CommonWL
CWL
SciWorkflows

Python
Common Workflow Language
Shell
+ 4