pypfilt
A Sequential Monte Carlo (SMC, or "particle filter") Python package for online model estimation and probabilistic forecasting.
Description
If there is a system or process that can be:
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Described (modelled) with mathematical equations; and
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Measured repeatedly in some (noisy) way.
Then you can use pypfilt to estimate the state and/or parameters of this system.
The Getting Started guide introduces the Lorenz-63 system of ordinary differential equations, which has chaotic solutions for some parameter values and initial states. This guide demonstrates:
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How to build a simulation model for the Lorenz-63 system;
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How to generate simulated observations from this model;
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How to fit the simulation model to observations; and
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How to generate forecasts that predict the future behaviour of the Lorenz-63 system.
The How-to Guides cover a range of further topics, including how to generate forecasts with:
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Continuous-time Markov chain (CTMC) models;
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Discrete-time Markov chain (DTMC) models;
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Ordinary differential equation (ODE) models; and
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Stochastic differential equation (SDE) models.
Participating organisations
Mentions
- 1.Author(s): Robert Moss, David J. Price, Nick Golding, Peter Dawson, Jodie McVernon, Rob J. Hyndman, Freya M. Shearer, James M. McCawPublished in Scientific Reports by Springer Science and Business Media LLC in 202310.1038/s41598-023-35668-6
- 2.Author(s): David J Price, Freya M Shearer, Michael T Meehan, Emma McBryde, Robert Moss, Nick Golding, Eamon J Conway, Peter Dawson, Deborah Cromer, James Wood, Sam Abbott, Jodie McVernon, James M McCawPublished in eLife by eLife Sciences Publications, Ltd in 202010.7554/elife.58785
- 3.Author(s): Robert Moss, Alexander E Zarebski, Peter Dawson, Lucinda J Franklin, Frances A Birrell, James M McCawPublished in Communicable Diseases Intelligence by Australian Government Department of Health and Aged Care in 201910.33321/cdi.2019.43.7
- 4.Author(s): Robert Moss, Alexander E. Zarebski, Sandra J. Carlson, James M. McCawPublished in Tropical Medicine and Infectious Disease by MDPI AG in 2019, page: 1210.3390/tropicalmed4010012
- 5.Author(s): Robert Moss, James E. Fielding, Lucinda J. Franklin, Nicola Stephens, Jodie McVernon, Peter Dawson, James M. McCawPublished in Australian and New Zealand Journal of Public Health by Elsevier BV in 2018, page: 69-7610.1111/1753-6405.12750
- 6.Author(s): Alexander E. Zarebski, Peter Dawson, James M. McCaw, Robert MossPublished in Infectious Disease Modelling by Elsevier BV in 2017, page: 56-7010.1016/j.idm.2016.12.004
- 7.Author(s): Robert Moss, Alexander Zarebski, Peter Dawson, James M. McCawPublished in Influenza and Other Respiratory Viruses by Wiley in 2016, page: 314-32310.1111/irv.12376
- 8.Author(s): R. MOSS, A. ZAREBSKI, P. DAWSON, J. M. McCAWPublished in Epidemiology and Infection by Cambridge University Press (CUP) in 2016, page: 156-16910.1017/s0950268816002053