Code and data supporting the publication: ZIMFLUX: Single molecule localization microscopy with patterned illumination in 3D

ZIMFLUX combines modulated excitation patterns with vectorial PSF engineering for

fluorescence microscopy. This deposit contains the build/configuration sources,

Python entrypoints and C++/.NET components required to reproduce the analyses

reported in the accompanying thesis chapter.

Contents:

• ZIMFLUX/ Python entrypoints (runfile.py and friends)

• photonpy/, photonj/ PhotonPy wrappers used by ZIMFLUX

• cpp/, vectorpsf/ native components (SMLMLib)

• cfg/, dotnet/ configuration and tooling

• SMLM.sln Visual Studio solution for SMLMLib

• BUILDING.txt, installing on conda.txt, README.md

Example 3D nanoruler datasets and calibration data can be found in Zimflux_sample_data.zip; see attached file. The code is released under MIT (see

LICENSE.txt).