Software | Research Software Directory

etv_routing_assignment

Code underlying the publication: Dispatching a fleet of electric towing vehicles for aircraft taxiing with conflict avoidance and efficient battery charging

Electric aircraft taxiing
Electric towing vehicles
Partial battery recharging
+ 2

Python
Markdown

1

16

finite-strain-inverse-designed-spinodoids

Data and Code underlying publication: Experiment-informed finite-strain inverse design of spinodal metamaterials

In situ characterization
Inverse design
Machine learning
+ 2

Other
Python
Matlab

5

16

citation.js

Citation.js converts formats like BibTeX, Wikidata JSON and BibJSON to CSL-JSON to convert to other formats like APA, Vancouver, RIS and back to BibTeX.

Bibliography
BibTeX
Data Citation
+ 2

JavaScript
TeX
Roff

6

16

Dive

Interactively explore millions of 2D and 3D data points in your browser, without the need to install anything.

Big data
Machine learning
Visualization

HTML
JavaScript
CSS
+ 1

2

16

pbg-ld

Access integrated data on genes and associated traits in plants

Data Analysis
genomics
Inter-operability & linked data

PLpgSQL
Shell
Python
+ 2

4

16

Machine learning-based classification model corresponding to the paper 'Machine learning to improve orientation estimation in sports situations challenging for inertial sensor use'

Inertial Measurement Unit
kinematics
Machine learning
+ 3

1

15

SLEPLET

SLEPLET is a Python package for the construction of Slepian wavelets in the spherical and manifold (via meshes) settings.

manifolds
python
slepian functions
+ 2

Python
TeX

1

15

Bluesky software: underlying the publication “Distributed Conflict Resolution at High Traffic Densities with Reinforcement Learning”

Air traffic management (ATM)
BlueSky
Conflict detection and resolution
+ 3

1

14

CIRRUS-HL-campaign-codes---Code-accompanying-dissertation

CIRRUS-HL campaign codes - Codes accompanying dissertation

Airborne measurements
Background aerosol
Backward trajectories
+ 7

Python
Markdown
YAML
+ 1

4

14

Code underlying the publication: Forecasting estuarine salt intrusion in the Rhine-Meuse delta using an LSTM model

chloride
Delta
estuary
+ 7

4

14

Data and Model of Scale Down Simulator for Industrial Syngas Fermentation

Fermentation
Process scale-up
Scale-down
+ 1

5

14

FAME_AMR_model

Data and code underlying Chapter 3 of the PhD thesis "Advanced Magnetocaloric Regenerators for Heat Pump Applications"

layered AMR
layering strategies
magnetocaloric heat pump
+ 5

Other
Python

3

14

Software package C1 belonging to the paper: Cold pool dynamics shape the response of extreme rainfall events to climate change

iterative rain cell tracking
precipitation patterns
rainfall intensity

3

14

Texcavator

Texcavator is a search engine and text mining application for creating word cloud and time line visualizations of large text corpora.

Text analysis & natural language processing
Visualization

JavaScript
Python
HTML
+ 1

2

14

COVID-19 Integrated Surveillance Data in Italy

COVID-19 integrated surveillance data provided by the Italian National Institute of Health and processed via UnrollingAverages.jl to deconvolve the weekly simple moving averages.

Clinical Data
Computational Epidemiology
COVID-19
+ 16

Julia
TeX
Python

2

13

LinkAhead

Open Source Research Data Management Software

Data
ETL
Inter-operability & linked data
+ 4

Java
Shell
Python
+ 2

6

13

MapReader

MapReader is an end-to-end computer vision (CV) pipeline for exploring and analyzing images at scale.

computer vision
digital humanities
geospatial
+ 4

Python
TeX
Dockerfile
+ 1

7

13

Xenon

If you are using remote machines to do your computations, and don’t feel like learning and implementing many different APIs, Xenon is the tool for you.

batch-job
distributed computing
FTP
+ 11

Java
Shell
Batchfile

11

13

Dataset for Nanowire solar cell above the radiative limit

nanowire
Shockley-Queisser limit
Solar cell devices

5

12

Gaussian FLORIDyn, Matlab implementation belonging to the paper: The revised FLORIDyn model: Implementation of heterogeneous flow and the Gaussian wake

FLOw Redirection and Induction Dynamics (FLORIDyn)
systems and control theory
wind currents
+ 1

1

12

Models and Optimization Tools for a Novel 3D Printed Capacitive Shear Stress Sensor

Capacitive Modeling
Capacitive Sensor
Mechanical Modeling
+ 2

4

12

Python notebook to generate Figure 3 Panel C from: "Adaptability and evolution of the cell polarization machinery in budding yeast"

death ratios
jupyter notebook
microscopy
+ 1

1

12

Python notebook to generate the cell sizes changes across yeast mutants (Figure 3 Panel D from paper: "Adaptability and evolution of the cell polarization machinery in budding yeast")

cell sizes averages
jupyter notebook
microscopy
+ 1

1

12

What does a Text Classifier Learn about Morality? An Explainable Method for Cross-Domain Comparison of Moral Rhetoric - code

Ethics
explainable artificial intelligence
Morality
+ 3

Python
Other
Markdown

7

12

nanopub

The nanopub library provides a high-level, user-friendly python interface for searching, publishing and retracting nanopublications.

Inter-operability & linked data

Python
Shell
Batchfile

3

12

AirSWMMv1.0

Code to incorporate entrapped air behaviour into SWMM (AirSWMM1.0)

Air–water interface interaction
Intermittent water supply
Stormwater management model (SWMM)
+ 1

C
Other

4

11

A Public Ground-Truth Dataset for Handwritten Circuit Diagram Images

CGHD
Circuit Diagram
CircuitGraph
+ 4

XML
JSON
Python
+ 2

1

11

Code to incorporate entrapped air pocket dynamics into SWMM (AirSWMM2.0)

Air pocket dynamics
Intermittent water supply
Pipe-filling events
+ 1

C
Other
Markdown

4

11

SIMULINK model for Lifetime Analysis of IGBT Power Modules in Passively Cooled Tidal Turbine Converters

IGBT modules
lifetime analysis
power electronic converters
+ 1

1

11

Software supporting the publication: Background Electromagnetic Noise Received via Ionospheric Propagation in a Remote Rural Location in Spain (set 2)

ambient noise
electromagnetic noise
ionosphere
+ 3

4

11

Source, documentation, tests: MACE: Automated Assessment of Stereochemistry of Transition Metal Complexes and its Applications in Computational Catalysis

automation
chemoinformatics
Computational Chemistry
+ 6

Chemical XYZ
Other
Jupyter Notebook
+ 5

2

11

DALES

DALES is a large-eddy simulation code designed for studies of the physics of the atmospheric boundary layer, including convective and stable boundary layers as well as cloudy boundary layers.

Fortran
C
TeX
+ 8

24

11

ExploreASL

ExploreASL is a pipeline and toolbox for image processing and statistics of arterial spin labeling perfusion MR images. It is designed as a multi-OS, open-source, collaborative framework that facilitates cross-pollination between image processing method developers and clinical investigators.

ASL
Image processing
MRI

MATLAB
C
Python

7

11

FastMLC

Detect clusters in for example large collections of DNA or protein sequences, and visualize the results in a web browser.

Big data
Machine learning
Visualization

C++
C
Makefile
+ 5

5

11

IncompressibleNavierStokes

This package implements energy-conserving solvers for the incompressible Navier-Stokes equations on a staggered Cartesian grid. It is based on the Matlab package INS2D/INS3D. The simulations can be run on the single/multithreaded CPUs or Nvidia GPUs.

HPC
Scientific machine learning

Julia

5

11

SIGA.py

Make genome annotations semantically interoperable

Inter-operability & linked data

Python

2

11

Global analysis of DNA methylation in hepatocellular carcinoma via a whole-genome bisulfite sequencing approach

DNA methylation analyses
prognosis model
WGBS (Whole Genome Bisulfite Sequencing)

1

10

HCOMP2022_ARCHIE

Analogy-based explanation evaluation dataset for HCOMP 2022 paper "It Is Like Finding a Polar Bear in the Savannah! Concept-level AI Explanations with Analogical Inference from Commonsense Knowledge."

Analogy
Commonsense Knowledge
Concept-level Explanation
+ 1

Other
Python
Markdown

5

10

Numerical models and datasets concerning the publication:"Electrocatalytic reaction-driven flow"

COMSOL multiphysics software
Simulation

1

10

TraViA: a Traffic data Visualization and Annotation tool in Python

HighD
NGSIM
pNEUMA
+ 2

1

10

ChemSpaX: A Python tool for local chemical space exploration

ChemSpaX is a Python package that can be used for local chemical space exploration of any structure. This is done by placing substuents on a pre-defined skeleton. A substituent can be chosen from an existing library and can be attached to the skeleton.

catalysis
Chemistry
python

Python
Shell

3

10

Cross-perspective Topic Modeling

An application that uses cross-perspective topic modeling to extract topics and opinions from text and provides insight into how they change over time.

Text analysis & natural language processing

Python
Jupyter Notebook
Shell

3

10

MDStudio

A tool to run molecular dynamics workflows.

High performance computing
Real time data analysis
Workflow technologies

Python
CSS
TypeScript
+ 5

4

10

Microscopy data, code and analysis underlying the publication "Optical STEM detection for scanning electron microscopy"

Electron Detection
Instrumentation Development
Scanning Electron Microscopy
+ 2

Other
Markdown
Jupyter Notebook
+ 2

6

9

ML-MoCap - Controller and Camera module Images

human movement
markerless
MarkerLess Motion Capture (ML-MoCap)
+ 1

1

9

Scripts and data accompanying publication: "Manure matters: Prospects for regional banana-livestock integration for sustainable intensification in South-West Uganda"

cattle
crop-livestock integration
East African Highland Banana
+ 5

1

9

SWMM_GNN_Repository_Paper_version

SWMM GNN metamodel – Code for paper: Transferable and Data Efficient Metamodeling of Storm Water System Nodal Depths Using Auto-Regressive Graph Neural Networks

GNN
Graph neural networks
Machine learning
+ 5

Other
Python
Jupyter Notebook
+ 2

4

9

Bacting

Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.

bioinformatics
Cheminformatics

Java
TeX

1

9

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