Software | Research Software Directory

mpcrl-greenhouse

Software underlying publication: Reinforcement learning-based model predictive control for greenhouse climate control

Agriculture
Greenhouse climate control
Model predictive control
+ 1

(Markdown)
(Other)
(Python)

2

21

Case Law App

Web application for exploring the citation network of Dutch court decisions.

Text analysis & natural language processing
Visualization

(CSS)
(HTML)
(JavaScript)

4

21

Citation File Format

The Citation File Format lets you provide citation metadata for software or datasets in plaintext files that are easy to read by both humans and machines.

FAIR
Inter-operability & linked data

(Python)

2

21

DoE2Vec

DoE2Vec is a self-supervised approach to learn exploratory landscape analysis features from design of experiments. The model can be used for downstream meta-learning tasks such as learninig which optimizer works best on a given optimization landscape.

Machine learning
optimization
python

(Makefile)
(Python)
(R)

1

21

etv_routing_assignment

Code underlying the publication: Dispatching a fleet of electric towing vehicles for aircraft taxiing with conflict avoidance and efficient battery charging

Electric aircraft taxiing
Electric towing vehicles
Partial battery recharging
+ 2

(Markdown)
(Python)

1

20

Matlab code for Full Range Adaptive Cruise Control with Integrated Collision Avoidance Strategy

Adaptive Cruise Control
collision avoidance algorithm
Full speed range ACC
+ 2

2

20

ReconUS

ReconUS v1.0 - Matlab toolbox for 2D, 3D and multi-probe ultrasound simulation, reconstruction and signal processing.

2d reconstructions
3D reconstruction
Beamforming
+ 4

(C++)
(JSON)
(Markdown)
+ 2

13

20

QTLTableMiner++

Extract gene-trait associations from scientific literature

Inter-operability & linked data
Text analysis & natural language processing

(Java)
(Shell)

3

20

Bluesky software: underlying the publication “Distributed Conflict Resolution at High Traffic Densities with Reinforcement Learning”

Air traffic management (ATM)
BlueSky
Conflict detection and resolution
+ 3

1

19

CHI2025_Plan-then-Execute_LLMAgent

User Interaction Dataset for CHI 2025 paper "Plan-Then-Execute: An Empirical Study of User Trust and Team Performance When Using LLM Agents As A Daily Assistant."

Daily Assistant
Human-AI Collaboration
large language models
+ 2

(CSS)
(HTML)
(JavaScript)
+ 7

3

19

Data and Optimisation model for space heating and committed emissions for the built environment

Carbon lock-in
Committed carbon emissions
Electrification of heating
+ 4

5

19

Foot Progression Angle Estimation

Use a single Accelerometer and Gyroscope on the foot to determine foot progression angle during walking.

FPA
IMU
Single sensor

(MATLAB)

0

19

StoryTeller

StoryTeller is a web application for visual analysis of textual data which can show you the connections between storylines, participants and other entities in complex humanities data.

Visualization

(CSS)
(HTML)
(JavaScript)

2

19

Machine learning-based classification model corresponding to the paper 'Machine learning to improve orientation estimation in sports situations challenging for inertial sensor use'

Inertial Measurement Unit
kinematics
Machine learning
+ 3

1

18

Software related to "Impact of optical aberrations on axial position determination by photometry"

Axial position
Gaussian fitting
Optical aberrations
+ 6

6

18

PolarMorphism

PolarMorphism uses results from GWAS of multiple phenotypes to output statistics per SNP that describe its degree of 'sharedness' across the phenotypes of interest and its overall (multivariate) effect size, as well as p-values indicating significance for each statistic.

genomics
GWAS
pleiotropy

(R)

0

18

Data and Model of Scale Down Simulator for Industrial Syngas Fermentation

Fermentation
Process scale-up
Scale-down
+ 1

5

17

Software used in the publication "A Non-parametric Bayesian Network for multivariate probabilistic modelling of Weigh-in-Motion System Data”

axle load
Bayesian Networks (BN)
Weigh in motion

3

17

IncompressibleNavierStokes

This package implements energy-conserving solvers for the incompressible Navier-Stokes equations on a staggered Cartesian grid. It is based on the Matlab package INS2D/INS3D. The simulations can be run on the single/multithreaded CPUs or Nvidia GPUs.

HPC
Scientific machine learning

(Julia)

5

17

SLEPLET

SLEPLET is a Python package for the construction of Slepian wavelets in the spherical and manifold (via meshes) settings.

manifolds
python
slepian functions
+ 2

(Python)
(TeX)

1

17

A Public Ground-Truth Dataset for Handwritten Circuit Diagram Images

CGHD
Circuit Diagram
CircuitGraph
+ 4

(JSON)
(Markdown)
(Other)
+ 2

1

16

Code to incorporate entrapped air pocket dynamics into SWMM (AirSWMM2.0)

Air pocket dynamics
Intermittent water supply
Pipe-filling events
+ 1

(C)
(Markdown)
(Other)

4

16

FAME_AMR_model

Data and code underlying Chapter 3 of the PhD thesis "Advanced Magnetocaloric Regenerators for Heat Pump Applications"

layered AMR
layering strategies
magnetocaloric heat pump
+ 5

(Other)
(Python)

3

16

Models and Optimization Tools for a Novel 3D Printed Capacitive Shear Stress Sensor

Capacitive Modeling
Capacitive Sensor
Mechanical Modeling
+ 2

4

16

Source, documentation, tests: MACE: Automated Assessment of Stereochemistry of Transition Metal Complexes and its Applications in Computational Catalysis

automation
chemoinformatics
Computational Chemistry
+ 6

(Automake)
("Chemical XYZ")
(HTML)
+ 5

2

16

SWMM_GNN_Repository_Paper_version

SWMM GNN metamodel – Code for paper: Transferable and Data Efficient Metamodeling of Storm Water System Nodal Depths Using Auto-Regressive Graph Neural Networks

GNN
Graph neural networks
Machine learning
+ 5

("Jupyter Notebook")
(Markdown)
(Other)
+ 2

4

16

citation.js

Citation.js converts formats like BibTeX, Wikidata JSON and BibJSON to CSL-JSON to convert to other formats like APA, Vancouver, RIS and back to BibTeX.

Bibliography
BibTeX
Data Citation
+ 2

("Go Template")
(JavaScript)
(TeX)

6

16

Dive

Interactively explore millions of 2D and 3D data points in your browser, without the need to install anything.

Big data
Machine learning
Visualization

(CSS)
(HTML)
(JavaScript)
+ 1

2

16

pbg-ld

Access integrated data on genes and associated traits in plants

Data Analysis
genomics
Inter-operability & linked data

(Dockerfile)
(Makefile)
(PLpgSQL)
+ 2

4

16

AirSWMMv1.0

Code to incorporate entrapped air behaviour into SWMM (AirSWMM1.0)

Air–water interface interaction
Intermittent water supply
Stormwater management model (SWMM)
+ 1

(C)
(Other)

4

15

Software package C1 belonging to the paper: Cold pool dynamics shape the response of extreme rainfall events to climate change

iterative rain cell tracking
precipitation patterns
rainfall intensity

3

15

Gaussian FLORIDyn, Matlab implementation belonging to the paper: The revised FLORIDyn model: Implementation of heterogeneous flow and the Gaussian wake

FLOw Redirection and Induction Dynamics (FLORIDyn)
systems and control theory
wind currents
+ 1

1

14

What does a Text Classifier Learn about Morality? An Explainable Method for Cross-Domain Comparison of Moral Rhetoric - code

Ethics
explainable artificial intelligence
Morality
+ 3

(Markdown)
(Other)
(Python)

7

14

MapReader

MapReader is an end-to-end computer vision (CV) pipeline for exploring and analyzing images at scale.

computer vision
digital humanities
geospatial
+ 4

(Dockerfile)
(Python)
(Shell)
+ 1

7

14

Texcavator

Texcavator is a search engine and text mining application for creating word cloud and time line visualizations of large text corpora.

Text analysis & natural language processing
Visualization

(CSS)
(HTML)
(JavaScript)
+ 1

2

14

Microscopy data, code and analysis underlying the publication "Optical STEM detection for scanning electron microscopy"

Electron Detection
Instrumentation Development
Scanning Electron Microscopy
+ 2

("Jupyter Notebook")
(Markdown)
(Other)
+ 2

6

13

ChemSpaX: A Python tool for local chemical space exploration

ChemSpaX is a Python package that can be used for local chemical space exploration of any structure. This is done by placing substuents on a pre-defined skeleton. A substituent can be chosen from an existing library and can be attached to the skeleton.

catalysis
Chemistry
python

(Python)
(Shell)

3

13

COVID-19 Integrated Surveillance Data in Italy

COVID-19 integrated surveillance data provided by the Italian National Institute of Health and processed via UnrollingAverages.jl to deconvolve the weekly simple moving averages.

Clinical Data
Computational Epidemiology
COVID-19
+ 16

(Julia)
(Python)
(TeX)

2

13

Xenon

If you are using remote machines to do your computations, and don’t feel like learning and implementing many different APIs, Xenon is the tool for you.

batch-job
distributed computing
FTP
+ 11

(Batchfile)
(Java)
(Shell)

11

13

Code underlying the publication: "RESTAD: Reconstruction and Similarity Transformer for time series Anomaly Detection"

Anomaly detection
Radial Basis Function (RBF) kernel
Time Series
+ 1

(Markdown)
(Other)
(Python)
+ 1

3

12

Dataset for Nanowire solar cell above the radiative limit

nanowire
Shockley-Queisser limit
Solar cell devices

5

12

fltk

FLTK toolkit supporting the publication: Aergia: leveraging heterogeneity in federated learning systems

federated learning
resource heterogeneity
Stragglers
+ 1

(Markdown)
(Other)
(Python)
+ 2

2

12

Python notebook to generate Figure 3 Panel C from: "Adaptability and evolution of the cell polarization machinery in budding yeast"

death ratios
jupyter notebook
microscopy
+ 1

1

12

Python notebook to generate the cell sizes changes across yeast mutants (Figure 3 Panel D from paper: "Adaptability and evolution of the cell polarization machinery in budding yeast")

cell sizes averages
jupyter notebook
microscopy
+ 1

1

12

nanopub

The nanopub library provides a high-level, user-friendly python interface for searching, publishing and retracting nanopublications.

Inter-operability & linked data

(JavaScript)
(Python)
(Shell)

3

12

Blade Element Momentum Theory Code for Positive and Negative Thrust Propellers

BEM
BEMT
Blade Element Momentum Theory
+ 2

1

11

Global analysis of DNA methylation in hepatocellular carcinoma via a whole-genome bisulfite sequencing approach

DNA methylation analyses
prognosis model
WGBS (Whole Genome Bisulfite Sequencing)

1

11

Numerical models and datasets concerning the publication:"Electrocatalytic reaction-driven flow"

COMSOL multiphysics software
Simulation

1

11