Software | Research Software Directory

Code supporting the publication: Gromit: Benchmarking the performance and scalability of blockchain systems

Benchmarking
Blockchain
Performance
+ 1

Other
Python
JSON
+ 3

3

17

Software used in the publication "A Non-parametric Bayesian Network for multivariate probabilistic modelling of Weigh-in-Motion System Data”

axle load
Bayesian Networks (BN)
Weigh in motion

3

17

Code underlying the publication: Forecasting estuarine salt intrusion in the Rhine-Meuse delta using an LSTM model

chloride
Delta
estuary
+ 7

4

16

Data and Model of Scale Down Simulator for Industrial Syngas Fermentation

Fermentation
Process scale-up
Scale-down
+ 1

5

16

etv_routing_assignment

Code underlying the publication: Dispatching a fleet of electric towing vehicles for aircraft taxiing with conflict avoidance and efficient battery charging

Electric aircraft taxiing
Electric towing vehicles
Partial battery recharging
+ 2

Python
Markdown

1

16

Machine learning-based classification model corresponding to the paper 'Machine learning to improve orientation estimation in sports situations challenging for inertial sensor use'

Inertial Measurement Unit
kinematics
Machine learning
+ 3

1

16

citation.js

Citation.js converts formats like BibTeX, Wikidata JSON and BibJSON to CSL-JSON to convert to other formats like APA, Vancouver, RIS and back to BibTeX.

Bibliography
BibTeX
Data Citation
+ 2

JavaScript
TeX
Roff

6

16

Dive

Interactively explore millions of 2D and 3D data points in your browser, without the need to install anything.

Big data
Machine learning
Visualization

HTML
JavaScript
CSS
+ 1

2

16

pbg-ld

Access integrated data on genes and associated traits in plants

Data Analysis
genomics
Inter-operability & linked data

PLpgSQL
Shell
Python
+ 2

4

16

SLEPLET

SLEPLET is a Python package for the construction of Slepian wavelets in the spherical and manifold (via meshes) settings.

manifolds
python
slepian functions
+ 2

Python
TeX

1

16

Bluesky software: underlying the publication “Distributed Conflict Resolution at High Traffic Densities with Reinforcement Learning”

Air traffic management (ATM)
BlueSky
Conflict detection and resolution
+ 3

1

15

CIRRUS-HL-campaign-codes---Code-accompanying-dissertation

CIRRUS-HL campaign codes - Codes accompanying dissertation

Airborne measurements
Background aerosol
Backward trajectories
+ 7

Python
Markdown
YAML
+ 1

4

15

PolarMorphism

PolarMorphism uses results from GWAS of multiple phenotypes to output statistics per SNP that describe its degree of 'sharedness' across the phenotypes of interest and its overall (multivariate) effect size, as well as p-values indicating significance for each statistic.

genomics
GWAS
pleiotropy

R

0

15

FAME_AMR_model

Data and code underlying Chapter 3 of the PhD thesis "Advanced Magnetocaloric Regenerators for Heat Pump Applications"

layered AMR
layering strategies
magnetocaloric heat pump
+ 5

Other
Python

3

14

Software package C1 belonging to the paper: Cold pool dynamics shape the response of extreme rainfall events to climate change

iterative rain cell tracking
precipitation patterns
rainfall intensity

3

14

Texcavator

Texcavator is a search engine and text mining application for creating word cloud and time line visualizations of large text corpora.

Text analysis & natural language processing
Visualization

JavaScript
Python
HTML
+ 1

2

14

Code to incorporate entrapped air pocket dynamics into SWMM (AirSWMM2.0)

Air pocket dynamics
Intermittent water supply
Pipe-filling events
+ 1

C
Other
Markdown

4

13

COVID-19 Integrated Surveillance Data in Italy

COVID-19 integrated surveillance data provided by the Italian National Institute of Health and processed via UnrollingAverages.jl to deconvolve the weekly simple moving averages.

Clinical Data
Computational Epidemiology
COVID-19
+ 16

Julia
TeX
Python

2

13

LinkAhead

Open Source Research Data Management Software

Data
ETL
Inter-operability & linked data
+ 4

Java
Shell
Python
+ 2

6

13

MapReader

MapReader is an end-to-end computer vision (CV) pipeline for exploring and analyzing images at scale.

computer vision
digital humanities
geospatial
+ 4

Python
TeX
Dockerfile
+ 1

7

13

Xenon

If you are using remote machines to do your computations, and don’t feel like learning and implementing many different APIs, Xenon is the tool for you.

batch-job
distributed computing
FTP
+ 11

Java
Shell
Batchfile

11

13

Dataset for Nanowire solar cell above the radiative limit

nanowire
Shockley-Queisser limit
Solar cell devices

5

12

Gaussian FLORIDyn, Matlab implementation belonging to the paper: The revised FLORIDyn model: Implementation of heterogeneous flow and the Gaussian wake

FLOw Redirection and Induction Dynamics (FLORIDyn)
systems and control theory
wind currents
+ 1

1

12

Models and Optimization Tools for a Novel 3D Printed Capacitive Shear Stress Sensor

Capacitive Modeling
Capacitive Sensor
Mechanical Modeling
+ 2

4

12

Python notebook to generate Figure 3 Panel C from: "Adaptability and evolution of the cell polarization machinery in budding yeast"

death ratios
jupyter notebook
microscopy
+ 1

1

12

Python notebook to generate the cell sizes changes across yeast mutants (Figure 3 Panel D from paper: "Adaptability and evolution of the cell polarization machinery in budding yeast")

cell sizes averages
jupyter notebook
microscopy
+ 1

1

12

What does a Text Classifier Learn about Morality? An Explainable Method for Cross-Domain Comparison of Moral Rhetoric - code

Ethics
explainable artificial intelligence
Morality
+ 3

Python
Other
Markdown

7

12

IncompressibleNavierStokes

This package implements energy-conserving solvers for the incompressible Navier-Stokes equations on a staggered Cartesian grid. It is based on the Matlab package INS2D/INS3D. The simulations can be run on the single/multithreaded CPUs or Nvidia GPUs.

HPC
Scientific machine learning

Julia

5

12

nanopub

The nanopub library provides a high-level, user-friendly python interface for searching, publishing and retracting nanopublications.

Inter-operability & linked data

Python
Shell
Batchfile

3

12

AirSWMMv1.0

Code to incorporate entrapped air behaviour into SWMM (AirSWMM1.0)

Air–water interface interaction
Intermittent water supply
Stormwater management model (SWMM)
+ 1

C
Other

4

11

A Public Ground-Truth Dataset for Handwritten Circuit Diagram Images

CGHD
Circuit Diagram
CircuitGraph
+ 4

XML
JSON
Python
+ 2

1

11

Numerical models and datasets concerning the publication:"Electrocatalytic reaction-driven flow"

COMSOL multiphysics software
Simulation

1

11

SIMULINK model for Lifetime Analysis of IGBT Power Modules in Passively Cooled Tidal Turbine Converters

IGBT modules
lifetime analysis
power electronic converters
+ 1

1

11

Software supporting the publication: Background Electromagnetic Noise Received via Ionospheric Propagation in a Remote Rural Location in Spain (set 2)

ambient noise
electromagnetic noise
ionosphere
+ 3

4

11

Source, documentation, tests: MACE: Automated Assessment of Stereochemistry of Transition Metal Complexes and its Applications in Computational Catalysis

automation
chemoinformatics
Computational Chemistry
+ 6

Chemical XYZ
Other
Jupyter Notebook
+ 5

2

11

ChemSpaX: A Python tool for local chemical space exploration

ChemSpaX is a Python package that can be used for local chemical space exploration of any structure. This is done by placing substuents on a pre-defined skeleton. A substituent can be chosen from an existing library and can be attached to the skeleton.

catalysis
Chemistry
python

Python
Shell

3

11

Cross-perspective Topic Modeling

An application that uses cross-perspective topic modeling to extract topics and opinions from text and provides insight into how they change over time.

Text analysis & natural language processing

Python
Jupyter Notebook
Shell

3

11

DALES

DALES is a large-eddy simulation code designed for studies of the physics of the atmospheric boundary layer, including convective and stable boundary layers as well as cloudy boundary layers.

Fortran
C
TeX
+ 8

24

11

ExploreASL

ExploreASL is a pipeline and toolbox for image processing and statistics of arterial spin labeling perfusion MR images. It is designed as a multi-OS, open-source, collaborative framework that facilitates cross-pollination between image processing method developers and clinical investigators.

ASL
Image processing
MRI

MATLAB
C
Python

7

11

FastMLC

Detect clusters in for example large collections of DNA or protein sequences, and visualize the results in a web browser.

Big data
Machine learning
Visualization

C++
C
Makefile
+ 5

5

11

SIGA.py

Make genome annotations semantically interoperable

Inter-operability & linked data

Python

2

11

Global analysis of DNA methylation in hepatocellular carcinoma via a whole-genome bisulfite sequencing approach

DNA methylation analyses
prognosis model
WGBS (Whole Genome Bisulfite Sequencing)

1

10

HCOMP2022_ARCHIE

Analogy-based explanation evaluation dataset for HCOMP 2022 paper "It Is Like Finding a Polar Bear in the Savannah! Concept-level AI Explanations with Analogical Inference from Commonsense Knowledge."

Analogy
Commonsense Knowledge
Concept-level Explanation
+ 1

Other
Python
Markdown

5

10

ML-MoCap - Controller and Camera module Images

human movement
markerless
MarkerLess Motion Capture (ML-MoCap)
+ 1

1

10

SWMM_GNN_Repository_Paper_version

SWMM GNN metamodel – Code for paper: Transferable and Data Efficient Metamodeling of Storm Water System Nodal Depths Using Auto-Regressive Graph Neural Networks

GNN
Graph neural networks
Machine learning
+ 5

Other
Python
Jupyter Notebook
+ 2

4

10

TraViA: a Traffic data Visualization and Annotation tool in Python

HighD
NGSIM
pNEUMA
+ 2

1

10

MDStudio

A tool to run molecular dynamics workflows.

High performance computing
Real time data analysis
Workflow technologies

Python
CSS
TypeScript
+ 5

4

10

Microscopy data, code and analysis underlying the publication "Optical STEM detection for scanning electron microscopy"

Electron Detection
Instrumentation Development
Scanning Electron Microscopy
+ 2

Other
Markdown
Jupyter Notebook
+ 2

6

9

All software