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Interactively explore millions of 2D and 3D data points in your browser, without the need to install anything.
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FastMLC
Detect clusters in for example large collections of DNA or protein sequences, and visualize the results in a web browser.
11
mentions
5
contributors
Cite this software
What FastMLC can do for you
- Provides an efficient and high precision clustering and embedding of large datasets followed by interactive 3D visualization
- The only tool of this kind
Keywords
Programming languages
- Other 1%
License
</>Source code
Participating organisations
Reference papers
Mentions
Journal articles
11- 1.Author(s): Xin Shen, Lin Xu, Zhiquan Zhang, Yitong Yang, Pengxian Li, Teng Ma, Shuai Guo, Lai-Yu Kwok, Zhihong SunPublished in Frontiers in Cellular and Infection Microbiology by Frontiers Media SA in 202310.3389/fcimb.2023.1114364
- 2.Author(s): Sikang Chen, Jian Gao, Jiexuan Chen, Yufeng Xie, Zheyuan Shen, Lei Xu, Jinxin Che, Jian Wu, Xiaowu DongPublished in Briefings in Bioinformatics by Oxford University Press (OUP) in 202310.1093/bib/bbad126
- 3.Author(s): Duong Vu, R. Henrik Nilsson, Gerard J. M. VerkleyPublished in Molecular Ecology Resources by Wiley in 2022, page: 2793-280910.1111/1755-0998.13651
- 4.Author(s): H.A.K. Maduranga, W.R.H. Weerasinghe, R.N. Attanayake, S. Santhirasegaram, C.D. Shevkar, A.S. Kate, G. Weerakoon, K.A.U. Samanthi, K. Kalia, P. A. ParanagamaPublished in Asian Journal of Chemistry by Asian Journal of Chemistry in 2021, page: 1425-143210.14233/ajchem.2021.23229
- 5.Author(s): Teun Boekhout, M. Catherine Aime, Dominik Begerow, Toni Gabaldón, Joseph Heitman, Martin Kemler, Kantarawee Khayhan, Marc-André Lachance, Edward J. Louis, Sheng Sun, Duong Vu, Andrey YurkovPublished in Fungal Diversity by Springer Science and Business Media LLC in 2021, page: 27-5510.1007/s13225-021-00475-9
- 6.Author(s): Runzi Chen, Shuliang Zhao, Meishe LiangPublished in Wireless Communications and Mobile Computing by Wiley in 202110.1155/2021/4071177
- 7.Author(s): Runzi Chen, Shuliang Zhao, Zhenzhen TianPublished in Computational Intelligence and Neuroscience by Wiley in 202110.1155/2021/8993543
- 8.Author(s): Jingfei Liu, Chao Jiang, Jing ZhengPublished in Applied Intelligence by Springer Science and Business Media LLC in 2020, page: 1280-129510.1007/s10489-020-01790-5
- 9.Author(s): Anna Cena, Marek GagolewskiPublished in Information Sciences by Elsevier BV in 2020, page: 324-33610.1016/j.ins.2020.02.025
- 10.Author(s): Duong Vu, Marizeth Groenewald, Gerard VerkleyPublished in Scientific Reports by Springer Science and Business Media LLC in 202010.1038/s41598-020-69245-y
- 11.Author(s): D. Vu, M. Groenewald, M. de Vries, T. Gehrmann, B. Stielow, U. Eberhardt, A. Al-Hatmi, J.Z. Groenewald, G. Cardinali, J. Houbraken, T. Boekhout, P.W. Crous, V. Robert, G.J.M. VerkleyPublished in Studies in Mycology by Westerdijk Fungal Biodiversity Institute in 2019, page: 135-15410.1016/j.simyco.2018.05.001
Testimonials
A very nice tool to cluster and visualize sequences. The work is well presented, the web application easy to use and the manuscript well written.
– Anonymous reviewer
Contributors
Contact person
Arnold Kuzniar
Netherlands eScience Center
DV
Duong Vu
Westerdijk Fungal Biodiversity Institute
Sonja Georgievska
Netherlands eScience Center
SS
Szanislo Szoke
Westerdijk Fungal Biodiversity Institute
ZP
Zvezdan Protic
Related projects
Massive Biological Data Clustering, Reporting and Visualization Tools
Sequence validation in the DNA barcoding project
Updated 21 months ago
Finished