All software

Unraphael

Unraphael is a computer vision tool for art history, designed to support the analysis of figure-outline similarities in images to study Renaissance copying practices. Its user-friendly interface lets researchers inspect structural patterns, revealing insights into artistic techniques.

UnrollingAverages.jl

A Julia package to deconvolve simple moving averages of time series.

UNSAT3D

Soil health is essential for infrastructure and plant growth. The UNSAT project aims to improve 3D soil image processing using machine learning and high-fidelity simulation data to study water transport and root-soil interactions during maize growth.

User-Defined Oceanographic Data Products

Allows researchers to access Oceans2.0 data products programmatically and also enable researchers to define, test, use and share processing code for user-defined data products in a custom-designed programming environment.

VarianESAPI-EQD2Converter

A Varian Eclipse scripting plugin for converting dose to EQD2 (equivalent dose in 2 Gy fractions). Automates the calculation of EQD2 for plans.

VarianESAPI-FieldEditor

A Varian Eclipse scripting plugin for editing treatment fields. Provides a graphical interface for modifying field shapes and parameters.

VarianESAPI-HalcyonGantryAngle

A Varian Eclipse scripting plugin for Halcyon gantry angle calculation. Automates the calculation of gantry angles for Halcyon plans.

Verbroken Verbinding NOA conversation survey

As part of our project Verbroken Verbinding we developed a conversation survey. This an AI-driven conversation with respondents. Contrary to conventional surveys, this method enables more detailed insights in the motivations behind answers to survey items.

Verticox+

Verticox+ is a Cox proportional hazards algorithm for vertically distributed data. The solution is based on the Verticox algorithm from Dai et al., 2022. It has been adapted to be used within the Vantage6 framework.

Virtual Health Gateway

The Virtual Health Gateway is a platform that facilitates direct, consistent, and standardized capture of diverse data types from research study participants in real-world settings.

Virus Seq

The VirusSeq Data Portal is an open-source and open-access data portal for all Canadian SARS-CoV-2 sequences and associated non-personal contextual data. It harmonizes, validates and automates submission to international databases.

visor

The goal of visor is to provide a set of tools for visibility analysis.

votca-xtp

VOTCA-XTP is a library which allows you to calculate the electronic properties of organic materials

vqls-prototype

Variational Quantum Linear Solver Library.

VU-Lab

This is the configuration and documentation page of the LARA lab automation setup at the VU. It incorporates SiLA servers for robotic arm, shakers and a microplate reader and runs the LARA lab automation framework for scheduling and orchestration.

Web-enabled Awareness Research Network (WARN)

Web-enabled Awareness Research Network - Earthquake and Tsunami detection.

Winnow

Confidence control and FDR estimation for de novo peptide sequencing

wntr-quantum

wntr-quantum (pronounced winter-quantum) extends the capabilities of the popular wntr package for water network modelling and analysis to quantum computing routine.

xarray-regrid

An xarray plugin that adds regridding utilities for datasets and dataarrays.

Xenon Docker images

For your testing needs a collection of Docker images with different file systems and batch schedulers.

X-LAB Plotting Manager

The X-LAB Plotting Manager is a modular framework for turning raw data into plots. It offers a structured, scalable alternative. By enforcing modular components with clear responsibilities and a configurable UI, it replaces tangled plotting scripts with a robust and reproducible analysis pipeline.

xNoise

XrayTIFF2h5

This repository provides a workflow to transform X-rays data originally stored in .TIFF format, into .h5. Overall, this makes the data more compressed and easier to process in machine learning pipelines, such as unsat.

yatiml

Python library for YAML type inference, schema checking and syntactic sugar.

Yoda

A system for reliable, long-term storing and archiving large amounts of research data during all stages of a study.

zampy

Tool for downloading Land Surface Model input data

ZarrVis (Ruisdael)

Zarr files visualizer for the web. Ruisdael observatory (TU Delft)

Zeeschuimer

Zeeschuimer is a browser extension that monitors traffic while browsing social media, and collects seen posts/items for later systematic analysis. Its target audience is researchers who study content on social media platforms that resist conventional scraping or API-based data collection.