All software
Excel-to-fhir
A utility to assist in managing FHIR resources in spreadsheets.
- Data processing
- FHIR
- TypeScript
EXCITED Machine Learning Workflow
An open workflow for creating machine learning models for estimating the global biospheric CO2 exchange.
- CO2
- Data Analysis
- geospatial
- + 4
- Jupyter Notebook
- Python
Experiment Launcher
Generate and launch Jupyter notebooks for your users.
- Workflow technologies
- Python
- Makefile
Explainable embeddings
Experiments with regard to explanation of embedded spaces and multi modal models.
- DIANNA
- Embedded spaces
- Explainable AI
- Jupyter Notebook
- Python
- HTML
- + 1
FAIR Data Point Client
fairdatapoint-client is a simple and elegant library to interact with FAIR Data Point resources from Python, e.g. read and write catalogs, datasets and distributions in an FDP server.
- Python
- Makefile
FHIR to CAPACITY
Retrieves and converts patient records from a FHIR endpoint and uploads it to a CAPACITY registry.
- FAIR
- Inter-operability & linked data
- Jupyter Notebook
- Python
fieldcompare
A Python package for regression testing simulation results. Compare field data supporting various structured formats such as CSV and VTK file formats, through Python API or the command-line interface.
- Data Analysis
- Numerical analysis
- python
- + 1
- Python
FLAME GPU
FLAME GPU is a GPU accelerated simulator for domain independent complex systems simulations. FLAME GPU provides a mapping between a simple description of an agent and its interactions into optimised GPU code. The software abstracts the details and complexity of the GPU away from modellers.
- GPU
- High performance computing
- Multi-scale & multi model simulations
- + 2
flamingo
Compute and filter molecular properties for quantum dot ligands
- High performance computing
- Python
fm128-radar
A python library to write ascii based fm128_radar files to be used in WRFDA
- Python
Forecasting the grid emission factor for the Netherlands
A workflow to produce emission factor forecasts for the electricity mix of the Netherlands, up to 7 days ahead.
- electricity grid
- emission factor
- Forecasting
- + 1
- Python
- Dockerfile
Davidson diagonalization in Fortran
This package contains a Modern Fortran implementation of the Davidson diagonalization algorithms to compute several eigenvalue-eigenvector pairs of a symmetric matrix
- High performance computing
- Fortran
- CMake
- Python
GalerkinToolkit.jl
GalerkinToolkit is a high-performance finite element (FE) toolbox fully implemented in the Julia programming language. It provides modular building blocks to easily implement custom finite element codes to solve partial differential equations (PDEs) using a variety of numerical schemes.
- Finite Element
- High performance computing
- Julia Package
- Julia
- GLSL
gemdat
a Generalized Molecular Dynamics Analysis Tool
- analysis
- molecular dynamics
- python
- + 1
- Python
- Nix
GenAP
Genetics and Genomics Analysis Platform (GenAP)
- Biology
- genetics
- genomics
- + 5
Geoflow visualizer
Visualizes any type of flow between countries. Takes a CSV as input, applies filtering and aggregation (danfojs) to show relations and data in a number of visualizations (d3.js)
- Visualization
- web-based
- JavaScript
- HTML
- CSS
GitHub action to set up gRPC
To compile C Plus code against gRPC in a GitHub action workflow you need to install it first. This GitHub action compiles or downloads it for you.
- TypeScript
GitHub action to set up singularity
To use Singularity containers in a GitHub action workflow you need to install it first. This GitHub Action downloads, compiles and installs it for you.
- TypeScript
- Shell
GraphvizDotLang.jl
Interface for Graphviz in Julia. This module helps to create graph visualizations programatically in Julia, with Graphviz as a back-end.
- Graphs
- Julia Package
- Visualization
- Julia
- Makefile
grpc4bmi
Run, read and write model state of a numerical simulation written in a variety of languages remotely from Python
- Multi-scale & multi model simulations
- Python
- C++
- Dockerfile
- + 5
H2 scenario explorer
Web application to visualize hydrogen production scenarios as part of HyChain WP1
- energy transition
- renewable energy
- Visualization
- HTML
- JavaScript
- Shell
H2 scenario preprocessing
Preprocessing script to create a database for the H2 scenario explorer
- Data processing
- energy transition
- renewable energy
- Python
- Jupyter Notebook
Components for Haddock3 analysis
React components used by analyse command of haddock3 and haddock3 web application.
- TypeScript
- HTML
- CSS
- + 1
haddock3-ui
The haddock3 web application had several components that could be used outside of the web application. This software contains those components.
- TypeScript
- HTML
- JavaScript
- + 2
Hadrianus scripts
Scripts that transform cultural heritage relational databases into linked data by using cultural heritage ontologies.
- Inter-operability & linked data
- Shell
- Perl
- Python
Harmony
Making harmonisation simple. Social scientists often have to compare items from different questionnaires or datasets. Harmony is a tool that uses natural language processing and generative AI models to help researchers harmonise questionnaire items quickly, even in different languages.
- AI
- Data
- Data Science
- + 10
- Python
- Jupyter Notebook
YODA
YODA is a lightweight C++ and Python library for histogramming and statistical analysis, designed for use in particle physics workflows. It supports reproducible, high-performance data analysis and is the foundation for data handling in tools like Rivet.
- Data Analysis
- High performance computing
- Statistics
- + 1
- C++
- TeX
- Python
- + 2
HERA_CAL_QUANTUM
Radioastronomy calibration pipeline of the HERA telescope ported on quantum computers
- calibration
- python
- Quantum Computing
- + 1
- Jupyter Notebook
- Python
- Shell
H-gear
This tool analyzes the transmission of political ideas during the American Revolution. It enables users to track shifts in concepts in letter correspondence networks, using semi-supervised topic modeling and temporal social network modeling to reveal ideological shifts and identify key influencers.
- American Revolution
- semi-supervised topic modeling
- social network analysis
- + 2
- R
- Python
- Batchfile
hhl-prototype
The HHL prototype allows to use the HHL algorithm to solve linear system of equations
- Numerical analysis
- Quantum Computing
- Python
holodev
A command-line tool written in shell script to simplify the creation of LXC Linux containers.
- Shell
- Makefile
HORTON
HORTON is a Helpful Open-source Research Tool for N-fermion systems, written primarily in the Python programming language. The ultimate goal of HORTON is to provide a platform for testing new ideas on the quantum many-body problem at a reasonable computational cost.
- electronic structure theory
- quantum chemistry
- Python
- C++
- Cython
- + 6
HPGEM
hpGEM is a C++ partial differential equation solver. It is intended for Discontinuous Galerkin Finite Element Methods, but can also do normal (conforming) Finite Element Methods and Finite Volume.
- Finite Element
- High performance computing
- C++
- CMake
- TeX
- + 6
htr-quality-classifier
A package to determine the quality of a a digitized text, from a handwritten script or scanned print (HTR/OCR output).
- Machine learning
- python
- Text analysis & natural language processing
- Jupyter Notebook
- Python
- Shell
iBridges
A wrapper around the python-irodsclient to allow for easy interaction with iRODS servers for research software engineers to integrate compute wokflows and data management.
- Data management
- iRODS
- Metadata Management
- + 1
- Python
- Jupyter Notebook
- Dockerfile
- + 2
iBridges-GUI
A graphical user interface to iRODS employing the iBridges python package.
- Data management
- Graphical user interface
- iRODS
- + 1
- Python
ICD_GEMs.jl
A Julia package that allows to translate ICD-9 into ICD-10 codes and viceversa via the General Equivalence Mappings (GEMs) of the International Classification of Diseases (ICD).
- CDC
- Clinical Data
- Coding Scheme
- + 12
- Julia
ICGC ARGO
Harmonising world-wide efforts to reduce the global burden of cancer
- Cancer Genomics
- Data portal
ICOS CP python library
This package, available at pip as icoscp, allows you to have direct access to data objects from the ICOS Carbon Portal where a "Preview" is available. It provides easy access to data objects hosted at the ICOS Carbon Portal. By using this library you can load data files directly into memory.
- Big data
- Data Analysis
- python
- + 2
- Python
- Just
ICOS data repository
The ICOS Portal app is a FAIR linked data repository for metadata and data. In first instance primarily targeted at hosting the high quality data from ICOS. The repository is optimized for machine to machine communication. Instances in production now for ICOS, Swedish SITES and ICOS Cities networks.
- Data
- Inter-operability & linked data
- metadata
- + 3
- Scala
- JavaScript
- HTML
- + 3
I-EMIC
An Implicit Earth system Model of Intermediate Complexity
- ESM
- oceanography
- Fortran
- C
- C++
- + 6
iEnvironment
iEnvironment is a web-based, extensible and distributed data management platform and user gateway for integrated environmental monitoring and modelling (IEMM).
- Benthic Macroinvertebrates
- Channel Morphology
- Channel Stability
- + 8
IMAGE-LAND-LUE
This is a free and open source software (FOSS) Python version of the simulation model IMAGE-land, the land cover change model from the IMAGE 3.1 Integrated Assessment Model (IAM). Most, but not all, capabilities of the original model are included.
- geospatial
- integrated assessment model
- land use change
- + 2
- Python
imas2xarray
Imas2xarray is a python library for reading IMAS data in hdf5 format into xarray.
- fusion-reactor
- hdf5
- python
- + 1
- Jupyter Notebook
- Python
- Shell
INA tool
A tool for visualising and analysing Institutional Statements
- Multilayer Networks
- Visualization
- TypeScript
- JavaScript
- CSS
- + 1
infra-stemmus-scope
Set-up and run STEMMUS-SCOPE on SURF research cloud (SRC)
- Workflow technologies
Internet Archive scraper
The Internet Archive scraper is a workflow for collecting webpages archived in Internet Archive's Wayback Machine. It is designed to run serverless on Amazon's AWS infrastructure.
- AWS
- Internet Archive
- python
- + 2
- Python
- HCL
- Shell
Introduction to deep learning lesson
This lesson gives an introduction to deep learning.
- deep learning
- lesson
- python
- HTML