All software
Eigencuda
Offload Eigen matrix-matrix multiplications to an Nvidia GPU
- GPU
- High performance computing
- C++
- CMake
eitprocessing
eitprocessing is an open source collaborative python library for the processing and analysis of electrical impedance tomography for clinical use.
- Electrical impedance tomography
- Image processing
- python
- Jupyter Notebook
- Python
- Dockerfile
era5cli
A command line interface to download ERA5 data from the Copernicus Climate Data Store
- Python
Atlas of climate projections
The atlas demonstrates outputs from the probabilistic projection methods developed or assessed in the European Climate Projection system EUCP Horizon2020 project.
- Visualization
- Jupyter Notebook
- Vue
- Python
- + 1
ewatercycle-hype
eWatercycle plugin for HYPE hydrological model
- Python
eWatercycle SURF Research Cloud
Codified instructions for deploying the eWaterCycle platform on the SURF Research Cloud.
- Jinja
- Python
- Shell
ewatercycle-lisflood
eWatercycle plugin for LISFLOOD hydrological model
- Python
ewatercycle-marrmot
eWatercycle plugin for MARRMoT hydrological model
- Python
ewatercycle-pcrglobwb
eWaterCycle plugin for PCRGlobWB hydrological model
- Python
ewatercycle-wflow
eWaterCycle plugin for wflow hydrological model
- Python
ewatercycle-wflowjl
Wflow.jl plugin for eWatercycle.
- Python
- Dockerfile
eWaterLeaf
If you have large amounts of Geospatial grid-based data you would like to explore quickly, eWaterLeaf could be the visualisation for you.
- Visualization
- JavaScript
- HTML
- CSS
Excel-to-fhir
A utility to assist in managing FHIR resources in spreadsheets.
- Data processing
- FHIR
- TypeScript
EXCITED Machine Learning Workflow
An open workflow for creating machine learning models for estimating the global biospheric CO2 exchange.
- CO2
- Data Analysis
- geospatial
- + 4
- Jupyter Notebook
- Python
Experiment Launcher
Generate and launch Jupyter notebooks for your users.
- Workflow technologies
- Python
- Makefile
Explainable embeddings
Experiments with regard to explanation of embedded spaces and multi modal models.
- DIANNA
- Embedded spaces
- Explainable AI
- Jupyter Notebook
- Python
- HTML
- + 1
FAIR Data Point Client
fairdatapoint-client is a simple and elegant library to interact with FAIR Data Point resources from Python, e.g. read and write catalogs, datasets and distributions in an FDP server.
- Python
- Makefile
fairtool
Fairtool is a simple Python package to make your computational materials data FAIR. It comes with a command-line interface to transform the raw output into both machine-readable and human-readable outputs. It optionally allows the user to visualize the entire dataset locally on a web server.
- Computational Physics
- Data Analysis
- FAIR
- + 4
- Python
FHIR to CAPACITY
Retrieves and converts patient records from a FHIR endpoint and uploads it to a CAPACITY registry.
- FAIR
- Inter-operability & linked data
- Jupyter Notebook
- Python
fieldcompare
A Python package for regression testing simulation results. Compare field data supporting various structured formats such as CSV and VTK file formats, through Python API or the command-line interface.
- Data Analysis
- Numerical analysis
- python
- + 1
- Python
FLAME GPU
FLAME GPU is a GPU accelerated simulator for domain independent complex systems simulations. FLAME GPU provides a mapping between a simple description of an agent and its interactions into optimised GPU code. The software abstracts the details and complexity of the GPU away from modellers.
- GPU
- High performance computing
- Multi-scale & multi model simulations
- + 2
flamingo
Compute and filter molecular properties for quantum dot ligands
- High performance computing
- Python
fm128-radar
A python library to write ascii based fm128_radar files to be used in WRFDA
- Python
Forecasting the grid emission factor for the Netherlands
A workflow to produce emission factor forecasts for the electricity mix of the Netherlands, up to 7 days ahead.
- electricity grid
- emission factor
- Forecasting
- + 1
- Python
- Dockerfile
Davidson diagonalization in Fortran
This package contains a Modern Fortran implementation of the Davidson diagonalization algorithms to compute several eigenvalue-eigenvector pairs of a symmetric matrix
- High performance computing
- Fortran
- CMake
- Python
GalerkinToolkit.jl
GalerkinToolkit is a high-performance finite element (FE) toolbox fully implemented in the Julia programming language. It provides modular building blocks to easily implement custom finite element codes to solve partial differential equations (PDEs) using a variety of numerical schemes.
- Finite Element
- High performance computing
- Julia Package
- Julia
- GLSL
gemdat
a Generalized Molecular Dynamics Analysis Tool
- analysis
- molecular dynamics
- python
- + 1
- Python
- Nix
GenAP
Genetics and Genomics Analysis Platform (GenAP)
- Biology
- genetics
- genomics
- + 5
Geoflow visualizer
Visualizes any type of flow between countries. Takes a CSV as input, applies filtering and aggregation (danfojs) to show relations and data in a number of visualizations (d3.js)
- Visualization
- web-based
- JavaScript
- HTML
- CSS
GitHub action to set up gRPC
To compile C Plus code against gRPC in a GitHub action workflow you need to install it first. This GitHub action compiles or downloads it for you.
- TypeScript
GitHub action to set up singularity
To use Singularity containers in a GitHub action workflow you need to install it first. This GitHub Action downloads, compiles and installs it for you.
- TypeScript
- Shell
GraphvizDotLang.jl
Interface for Graphviz in Julia. This module helps to create graph visualizations programatically in Julia, with Graphviz as a back-end.
- Graphs
- Julia Package
- Visualization
- Julia
- Makefile
grpc4bmi
Run, read and write model state of a numerical simulation written in a variety of languages remotely from Python
- Multi-scale & multi model simulations
- Python
- C++
- Dockerfile
- + 5
H2 scenario explorer
Web application to visualize hydrogen production scenarios as part of HyChain WP1
- energy transition
- renewable energy
- Visualization
- HTML
- JavaScript
- Shell
H2 scenario preprocessing
Preprocessing script to create a database for the H2 scenario explorer
- Data processing
- energy transition
- renewable energy
- Python
- Jupyter Notebook
Components for Haddock3 analysis
React components used by analyse command of haddock3 and haddock3 web application.
- TypeScript
- HTML
- CSS
- + 1
haddock3-ui
The haddock3 web application had several components that could be used outside of the web application. This software contains those components.
- TypeScript
- HTML
- JavaScript
- + 2
Hadrianus scripts
Scripts that transform cultural heritage relational databases into linked data by using cultural heritage ontologies.
- Inter-operability & linked data
- Shell
- Perl
- Python
Harmony
Making harmonisation simple. Social scientists often have to compare items from different questionnaires or datasets. Harmony is a tool that uses natural language processing and generative AI models to help researchers harmonise questionnaire items quickly, even in different languages.
- AI
- Data
- Data Science
- + 10
- Python
- Jupyter Notebook
YODA
YODA is a lightweight C++ and Python library for histogramming and statistical analysis, designed for use in particle physics workflows. It supports reproducible, high-performance data analysis and is the foundation for data handling in tools like Rivet.
- Data Analysis
- High performance computing
- Statistics
- + 1
- C++
- TeX
- Python
- + 2
HERA_CAL_QUANTUM
Radioastronomy calibration pipeline of the HERA telescope ported on quantum computers
- calibration
- python
- Quantum Computing
- + 1
- Jupyter Notebook
- Python
- Shell
H-gear
This tool analyzes the transmission of political ideas during the American Revolution. It enables users to track shifts in concepts in letter correspondence networks, using semi-supervised topic modeling and temporal social network modeling to reveal ideological shifts and identify key influencers.
- American Revolution
- semi-supervised topic modeling
- social network analysis
- + 2
- R
- Python
- Batchfile
hhl-prototype
The HHL prototype allows to use the HHL algorithm to solve linear system of equations
- Numerical analysis
- Quantum Computing
- Python
holodev
A command-line tool written in shell script to simplify the creation of LXC Linux containers.
- Shell
- Makefile
HORTON
HORTON is a Helpful Open-source Research Tool for N-fermion systems, written primarily in the Python programming language. The ultimate goal of HORTON is to provide a platform for testing new ideas on the quantum many-body problem at a reasonable computational cost.
- electronic structure theory
- quantum chemistry
- Python
- C++
- Cython
- + 6
HPGEM
hpGEM is a C++ partial differential equation solver. It is intended for Discontinuous Galerkin Finite Element Methods, but can also do normal (conforming) Finite Element Methods and Finite Volume.
- Finite Element
- High performance computing
- C++
- CMake
- TeX
- + 6
htr-quality-classifier
A package to determine the quality of a a digitized text, from a handwritten script or scanned print (HTR/OCR output).
- Machine learning
- python
- Text analysis & natural language processing
- Jupyter Notebook
- Python
- Shell
iBridges
A wrapper around the python-irodsclient to allow for easy interaction with iRODS servers for research software engineers to integrate compute wokflows and data management.
- Data management
- iRODS
- Metadata Management
- + 1
- Python
- Jupyter Notebook
- Dockerfile
- + 2