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179 software items. Page 1 of 15. 12 items per page. 1 filters active.
1-12 of 179

COPASI

COPASI is an open source software for simulation and analysis of biochemical networks and their dynamics. It provides simulations using ODEs, SDEs, or Gillespie's stochastic simulation algorithm, with optional discrete events. COPASI provides several analyses, optimization, and parameter estimation.

  • Dynamics
  • optimization
  • Parameter estimation
  • + 3
  • Batchfile
  • C
  • C#
  • + 17
12
3009

BridgeDb Java

Java library for identifier mapping

  • Data
  • persistent identifiers
  • Batchfile
  • CSS
  • HTML
  • + 5
18
245

OpenChrom

OpenChrom is a vendor independent open source software for chromatography, spectrometry and spectroscopy.

  • chromatography
  • mass spectrometry
  • CSS
  • HTML
  • Java
  • + 1
2
236

NNPDF

Fitting proton substructure to observation data using neural networks

  • Machine learning
  • PDF
  • C
  • CSS
  • HTML
  • + 5
7
223

Code and data underlying the publication: City3D: Large-scale Building Reconstruction from Airborne LiDAR Point Clouds

Code and data underlying the publication: City3D: Large-scale Building Reconstruction from Airborne LiDAR Point Clouds

  • Building
  • Point Cloud
  • Surface-reconstruction
  • + 1
  • Automake
  • C
  • C++
  • + 8
4
144

Scholia

Graphical User Interface around Wikidata that uses SPARQL to collect data

  • Wikidata
  • CSS
  • Dockerfile
  • HTML
  • + 3
4
143

Paired omics data platform

If you do metabolomics experiments with mass spectra and have sequenced the genomes of the samples, then the platform can help you link them.

  • Inter-operability & linked data
  • CSS
  • Dockerfile
  • HTML
  • + 3
2
135

MAGMa

MAGMa is an online application for the automatic chemical annotation of mass spectrometry data.

  • Big data
  • Visualization
  • CSS
  • Cython
  • Dockerfile
  • + 5
3
116

grlc

Builds a web API from SPARQL queries hosted on GitHub to accessing triple store data.

  • garlic
  • Inter-operability & linked data
  • CSS
  • Dockerfile
  • HTML
  • + 4
3
94

4CAT Capture & Analysis Toolkit

The 4CAT Capture and Analysis Toolkit provides modular data capture & analysis for a variety of social media platforms. Its goal is to make the capture and analysis of data from these platforms accessible to people through a web interface, without requiring any programming or web scraping skills.

  • Big data
  • python
  • Social media
  • + 1
  • CSS
  • Dockerfile
  • HTML
  • + 4
3
92

NPLinker Web Application

This is the NPLinker web application, developed with Plotly Dash. It enables interactive visualization of NPLinker predictions and is designed to be run locally or in a containerized environment.

  • Data mining
  • Genome
  • Metabolome
  • + 2
  • CSS
  • Dockerfile
  • Mustache
  • + 1
13
82

GSA report

GSAreport is an application to easily generate reports that describe the global sensitivities of your input parameters as best as possible. You can use the reporting application to inspect which features are important for a given real world function / simulator or model.

  • Explainable AI
  • Machine learning
  • python
  • + 1
  • CSS
  • HTML
  • Jupyter Notebook
  • + 1
2
64