Sign in
Ctrl K
Software Highlights
Browse all Highlights

All software

1Filter
Keywords
192
Program languages
99
Licenses
21
1-12 of 110
Cover image for COPASI

COPASI

COPASI is an open source software for simulation and analysis of biochemical networks and their dynamics. It provides simulations using ODEs, SDEs, or Gillespie's stochastic simulation algorithm, with optional discrete events. COPASI provides several analyses, optimization, and parameter estimation.

  • Dynamics
  • optimization
  • Parameter estimation
  • + 3
  • C++
  • Java
  • Fortran
  • + 17
12
2616
Cover image for Chemistry Development Kit

Chemistry Development Kit

Open Source cheminformatics library.

  • Cheminformatics
  • Chemistry
  • Computational Chemistry
  • Java
  • Pawn
  • HTML
5
820
Cover image for OpenChrom

OpenChrom

OpenChrom is a vendor independent open source software for chromatography, spectrometry and spectroscopy.

  • chromatography
  • mass spectrometry
  • Java
  • CSS
  • HTML
2
182
Cover image for BridgeDb Java

BridgeDb Java

Java library for identifier mapping

  • Data
  • persistent identifiers
  • Java
  • Perl
  • Shell
  • + 5
18
117
Cover image for ESMValCore

ESMValCore

ESMValTool Core: core functionalities and driver for ESMValTool, a community diagnostic and performance metrics tool for routine evaluation of Earth System Models in CMIP.

  • Big data
  • Optimized data handling
  • Visualization
  • + 1
  • Python
  • Jupyter Notebook
  • HTML
  • + 5
48
107
Cover image for NNPDF

NNPDF

Fitting proton substructure to observation data using neural networks

  • Machine learning
  • PDF
  • Python
  • Jupyter Notebook
  • CSS
  • + 4
7
106
Cover image for Paired omics data platform

Paired omics data platform

If you do metabolomics experiments with mass spectra and have sequenced the genomes of the samples, then the platform can help you link them.

  • Inter-operability & linked data
  • TypeScript
  • JavaScript
  • HTML
  • + 3
2
99
Cover image for MAGMa

MAGMa

MAGMa is an online application for the automatic chemical annotation of mass spectrometry data.

  • Big data
  • Visualization
  • Python
  • JavaScript
  • Makefile
  • + 5
3
95
Cover image for grlc

grlc

Builds a web API from SPARQL queries hosted on GitHub to accessing triple store data.

  • garlic
  • Inter-operability & linked data
  • Python
  • HTML
  • TeX
  • + 4
3
77
Cover image for Scholia

Scholia

Graphical User Interface around Wikidata that uses SPARQL to collect data

  • Wikidata
  • JavaScript
  • Python
  • HTML
  • + 3
4
72
Cover image for Glotaran

Glotaran

Glotaran: A Java-Based Graphical User Interface for the R Package TIMP

  • global analysis
  • target analysis
  • time-resolved spectroscopy
  • Java
  • HTML
2
56
Cover image for Via Appia Visualization

Via Appia Visualization

A web application which visualizes the point clouds and additional data gathered in the Via Appia project with WebGL.

  • Visualization
  • JavaScript
  • HTML
  • CSS
8
46