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Magnus Palmblad

Magnus Palmblad

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Logo for compareMS2

compareMS2

compareMS2 is a tool for direct comparison of tandem mass spectrometry datasets, typically from liquid chromatography-tandem mass spectrometry (LC-MS/MS), defining a distance as a function of the share of similar spectra. Applications span biomedicine, phylogenetics, forensics and food science.

  • Forensics
  • mass spectrometry
  • phylogenetics
  • + 1
  • (C)
  • (CSS)
  • (HTML)
  • + 2
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Logo for Workflomics

Workflomics

Web platform for workflow exploration and benchmarking in bioinformatics

  • Inter-operability & linked data
  • Workflow technologies
  • (CSS)
  • (HTML)
  • (JavaScript)
  • + 1
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mzRecal

mzRecal recalibrates mass spectrometry (MS1) data in mzML format, using peptide identifications in mzIdentML.

  • mass spectrometry
  • proteomics
  • (Dockerfile)
  • (Go)
  • (Makefile)
  • + 2
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addFeatures

addFeatures adds spot images to a SCiLS Lab dataset from a list of defined mass spectral features.

  • Image processing
  • mass spectrometry
  • (R)
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