All software
CanDIG CHORD
CHORD is a project to build a federated, Canadian, national data service for privacy- sensitive genomic and related health data. It allows the technologies and services being built by CanDIG and its international partners to be made available to the Canadian health research community more broadly.
- CanDIG
- GA4GH
- genomics
- Python
- Lua
- Shell
CanGeo Project
The goal of this project is to provide a web service providing inland waterbodies initially available on GeoBase and updated using the most recent Landsat-8 imagery.
- canada
- GeoRSS
- imagery
- + 7
CanWIN
CanWIN (Canadian Watershed Information Network) is the data centre for the Centre for Earth Observation Science (CEOS). We support research and education, and inform management, policy and evidence based decision-making from the Nelson River Watershed to the Arctic.
- Arctic
- geospatial
- metadata
- + 4
Carbon Budget Explorer (CABE)
Web application to visualize countries' carbon emission pathways under various views on fairness.
- Svelte
- TypeScript
- Python
- + 3
caselawnet
Caselawnet constructs citation networks from collections of Dutch case law.
- Big data
- Jupyter Notebook
- Python
- HTML
- + 1
CAT
CAT is a collection of tools designed for the construction of various chemical compounds.
- High performance computing
- Python
- Shell
ccglib
The Complex Common GEMM Library (ccglib) provides mixed-precision matrix-matrix multiplication kernels for complex data.
- CUDA
- GPU
- High performance computing
- + 1
- C++
- Cuda
- Python
- + 3
CDF2Medmij-Mapping-tool
The CDF2Medmij-Mapping-tool facilitates the seamless transformation of cohort data into MedMij-compliant FHIR formats, enabling the harmonization of diverse datasets within a federated learning infrastructure.
- TypeScript
- JavaScript
- HTML
- + 2
Ceiba
Ceiba and its command-line interface Ceiba-cli solve the problem of computing, storing, and securely sharing computationally expensive simulation results.
- Optimized data handling
- Python
- TeX
- Shell
- + 1
ceiba-cli
command line interface to interact to interact with the ceiba web server
- Optimized data handling
- Python
Cerise
Cerise is a service for running CWL workflows on HPC resources. You add software, tool descriptions, and connection information, then your user runs workflows whenever they want.
- High performance computing
- Optimized data handling
- Workflow technologies
- Python
- Common Workflow Language
- Dockerfile
- + 2
cerulean
A Python 3 library for talking to HPC clusters and supercomputers.
- High performance computing
- SFTP
- SLURM
- + 2
- Python
- Shell
- Dockerfile
Cesium-ncWMS
Web Application that visualizes data stored in the NetCDF format on a globe.
- Visualization
- JavaScript
- HTML
- CSS
- + 1
cffconvert GitHub Action
GitHub action to validate CITATION.cff files, and convert to other citation formats using the dockerized version of cffconvert
CHAMP-EU
The Cornell-Holland Ab-initio Materials Package (CHAMP) is a quantum Monte Carlo suite of programs for electronic structure calculations. The code is developed by Claudia Filippi and Saverio Moroni, with significant contributions by Ravindra Shinde, N. Renaud, V. Azizi, E. Landinez, and S. Shepard.
- Chemistry
- High performance computing
- Physics
- + 1
- C
- Fortran
- Nemerle
- + 16
check-deps
This Python script checks whether a given set of software dependencies is met. This script itself is completely stand-alone and depends only on Python being installed. You may include this script along with a `dependencies.ini` in a project that has a diverse set of dependencies.
- Dependency Hell
- python
- Workflow technologies
- Python
- CSS
- Awk
- + 1
Chemical Analytics Platform
Chemical Analytics Platform is a freely available Virtual Machine encompassing tools, databases, and KNIME workflows.
- Workflow technologies
- Shell
- Smarty
Cityblocks
Python utility to generate local climate zone (LCZ) tiles for rendering in 3D in QGIS
- QML
- Python
classmodel/form
Form component that renders a JSON schema using Solid UI components.
- TypeScript
- Jupyter Notebook
- JavaScript
- + 2
CLASS-web
Implementation of the Chemistry Land-surface Atmosphere Soil Slab (CLASS) model that runs entirely in the browser. For more information on CLASS, see https://classmodel.github.io/.
- web service
- TypeScript
- Jupyter Notebook
- JavaScript
- + 2
cleanX
CleanX is an open-source python library for exploring, cleaning and augmenting large datasets of X-rays, or certain other types of radiological images.
- Image processing
- Machine learning
- Jupyter Notebook
- Python
- TeX
- + 3
ClinDIG
ClinDIG provides a federated data management and analysis solution for clinical and genomic data while to provide opportunity for distributed analysis centred on protecting patient privacy.
- clinical
- federated
- genomics
- + 1
- Python
- Shell
- Smarty
- + 6
clumped-processing
Clumped isotope measurement processing script for Thermo Fisher MAT 253 plus isotope ratio mass spectrometer with the Kiel IV
- clumped isotope
- Data Analysis
- mass spectrometry
- + 3
- HTML
- R
clumpedr
Clumpedr aims to facilitate analysis of clumped isotope data. It builds on isoreader which is used to import raw data files from the mass spectrometer, and most of the important data processing parts are based on Huntington et al. 2009 and Daëron et al. 2016.
- Data Analysis
- mass spectrometry
- R
- Makefile
- Rez
Code Auditor
A package and command-line utility to audit code quality and compliance to the best practices.
- code quality
- conformity assessment
- software development
- Python
CoeusAI
The CoeusAI QGIS plugin is designed for exploration of multiband geospatial datasets. It lets the user iteratively train and retrain segmentation models in seconds. A combination of Deep learning and traditional machine learning is used, leveraging the best of both methods.
- deep learning
- gis
- Machine learning
- + 2
- Python
Collens
Collens is a dynamic web-based tool designed for scholars to compare textual variants with annotations. Utilizing machine learning, it offers an efficient workflow for analyzing multiple versions of literary and scholarly documents.
- digital humanities
- Visualization
- Svelte
- TypeScript
- JavaScript
- + 2
Compass-school
This Python implementation tries to model school choice and resulting school segregation based on the work of Schelling (1971) and Stoica & Flache (2014).
- Agent-based modeling
- Python
- HTML
Compas Toolkit
The Compas Toolkit is a high-performance C++ library offering GPU-accelerated functions for use in quantitative MRI research.
- GPU
- High performance computing
- MRI
- Cuda
- C++
- Python
- + 4
ConvolutionalNeuralOperators.jl
Julia package to implement Convolutional Neural Operators
- Julia Package
- Machine learning
- Scientific machine learning
- Julia
Cosimplat
Co-simulation framework made for RESCUE project
Cosmology.jl
Cosmology library for Julia
- astronomy
- Astrophysics
- cosmology
- + 1
- Julia
CoupledNODE
CoupledNODE.jl is a SciML repository that extends NODEs (Neural Ordinary Differential Equations) to C-NODEs (Coupled Neural ODEs), providing a data-driven approach to modelling solutions for multiscale systems when exact solutions are not feasible.
- Julia Language
- Julia Package
- Machine learning
- + 1
- Julia
- Shell
rcrisp
rcrisp provides tools to automate the morphological delineation of riverside urban areas.
- Data Analysis
- geospatial
- R
- + 1
- R
- TeX
Cronian
Cronian is a Python package for building copper plate optimization models in Pyomo to optimize flexibility scheduling in multi-carrier integrated energy systems, which are specified through simple YAML and CSV files.
- Python
- Shell
CrowdED
CrowdED is a two-staged statistical guideline for optimal crowdsourcing experimental design in order to a-priori estimate optimal workers and tasks' assignment to obtain maximum accuracy on all tasks.
- Citizen Science
- Crowdsourcing
- Data Simulation
- Python
- R
- Dockerfile
cudawrappers
The cudawrappers library is a C++ wrapper for the Nvidia C libraries such as the CUDA driver, NVRTC, and cuFFT.
- accelerators
- CUDA
- GPU
- C++
- CMake
- Python
- + 2
The Cultural Heritage AI Cookbook: Notebooks
Google Colab notebook that uses large language models for analyzing and expanding text metadata related to cultural heritage
- cultural heritage
- large language models
- named entity linking
- + 2
- Jupyter Notebook
- Python
cvasl
This library allows exploration and analyses of neuroimaging datsets. The software was developed to allow implementation of multiple large data harmonization and machine learning algorithms over neuroradiology datasets. The core algorithms are implemented in Python.
- Jupyter Notebook
- Python
- R
- + 3
CWERNIrevamped
An improved remake of the original CWERNI R- package. This package simulates community wide evolutionary rescue in a neutral community.
- Community ecology
- Community-wide evolutionary rescue
- evolution
- + 3
- R
cwltool
The reference implementation of the Common Workflow Language standards
- CommonWL
- CWL
- SciWorkflows
- Python
- Common Workflow Language
- Shell
- + 4
CWRC-Writer
An in-browser text markup editor for collaborative editing of scholarly projects.
- LOD
- named entity linking
- named entity Recognition
- + 3
- JavaScript
- CSS
- Less
- + 2
Data Processing (What Works When for Whom)
Data processing scripts for the project What Works When for Whom
- Jupyter Notebook
- Python
- Shell
DataStream
DataStream is a powerful online platform for sharing information about freshwater health. It is open access and built with communities, policy-makers and researchers in mind.
- Water quality
- watersheds
Democracy Datasets
Sentence-wise split datasets of country reports in CSV format
- CSV
- dataset
Democracy Scraping Tool
A scraping tool to scrape various sources of country reports.
- scraping
- Python
Democracy text classification
LLM transfer learning to classify country reports into democracy dimensions.
- fine-tuning
- llm
- transfer learning
- Jupyter Notebook
- Python
Democracy Topic Modelling
Various Jupyter notebooks for topic modelling on democracy texts including BERT and dictionary, keyword-based approaches.
- BERT
- dictionary
- Topic Modelling
- Jupyter Notebook
- Python