All software
addFeatures
addFeatures adds spot images to a SCiLS Lab dataset from a list of defined mass spectral features.
- Image processing
- mass spectrometry
- (R)
admtools
Estimate age-depth models in geology and use them to transform various types of data (fossil ages, phylogenetic trees, trait evolution of lineages) between the time domain and the stratigraphic domain.
- Age-depth modeling
- Geochronology
- Sedimentology
- + 1
- (R)
Aiida-CHAMP
The aiida-champ plugin to handle the CHAMP workflow using AiiDA.
- python
- workflow
- (Python)
- (Shell)
aiproteomics
Generate and compare deep learning models for generating synthetic mass spectral libraries
- Machine learning
- mass spectrometry
- phosphoproteomics
- + 1
- ("Jupyter Notebook")
- (Python)
- (Shell)
Allelic Variation Explorer
If you are studying how single nucleotide polymorphisms are clustered in genomic samples, then the Allelic Variation Explorer can help you visualize them.
- Visualization
- (AngelScript)
- (Dockerfile)
- (Python)
MPI-AMRVAC
MPI-AMRVAC is a parallel adaptive mesh refinement framework aimed at solving (primarily hyperbolic) partial differential equations by a number of different numerical schemes. The emphasis is on (near) conservation laws and on shock-dominated problems in particular.
- (Fortran)
- (Makefile)
- (Perl)
- + 2
ANNUBeS
ANNUBeS is a deep learning framework meant to generate synthetic data and train on them neural networks aimed at developing and evaluating animals' training protocols in neuroscience.
- neural networks
- Neuroscience
- (Python)
Annular
Annular is a setup for running coupled energy system models with the aim of modeling flexibility scheduling and the policy regulations that affect the behavior of flexibility providers.
- ("Jupyter Notebook")
- (Python)
ArcticConnect
ArcticConnect is a network-enabled platform for realizing geospatial referencing of information about the arctic system derived from research, education, and private sector activities in the arctic and subarctic.
- Arctic
- Polar
- (HTML)
Arctic Web Map
Arctic Web Map (AWM) is an Arctic-specific web mapping tool allowing researchers to customize map projections for scientifically accurate visualization and analysis, a function that is critical for arctic research but missing in existing web mapping platforms.
- data collection
- python
- wildlife
- (CSS)
- (JavaScript)
- (Python)
- + 1
ARISE biocloud
The Biocloud is the underlying digital back-end infrastructure of the ARISE program.
- (Dockerfile)
- ("Jupyter Notebook")
- (Python)
Arpra
Arpra is a C library for analyzing the propagation of numerical error in arbitrary precision IEEE-754 floating-point computations.
- Affine Arithmetic
- Arbitrary Precision
- Interval Arithmetic
- + 2
- (C)
- (M4)
- (Makefile)
asreview-simulation
Command line interface to simulate an ASReview analysis using a variety of prior sampling strategies, classifiers, feature extractors, queriers, balancers, and stopping rules, all of which can be configured to run with custom parameterizations.
- AI
- ASReview
- Automated Systematic Review
- + 4
- (Python)
asrlitcompare
A tool written in rmarkdown for assessing the level of agreement between two raters following screening in ASReview. Users only need the two .csv files downloaded from ASReview, and the tool will automatically compile a summary report as an HTML file, viewable in your web browser.
- ASReview
- inter-rater reliability
- literature screening
- + 1
- (AppleScript)
- (Awk)
- (Batchfile)
- + 14
AstroImages.jl
Visualization of astronomical images in Julia
- astronomy
- Astrophysics
- Julia Package
- + 1
- (Julia)
AstroLib.jl
Bundle of small astronomical and astrophysical routines.
- astronomy
- Astrophysics
- Julia Package
- (Julia)
Atlascine
Atlascine is an open-source, online mapping platform dedicated to bringing stories and maps closer together. This tool combines multimedia storytelling with digital mapping technologies to enable researchers to create, interact with and study spatial relationships within and between stories.
- atlas
- geovisualization
- Mapping stories
- + 3
- (CSS)
- (HTML)
- (JavaScript)
AttentionLayer.jl
Implements the Attention mechanism in Julia as a modular Lux layer
- Julia Package
- Machine learning
- Scientific machine learning
- (Julia)
haddock3-webapp
Web app to build haddock3 configuration and run it.
- (CSS)
- (Dockerfile)
- (JavaScript)
- + 2
i-VRESSE bartender
Bartender is a middleware web service to schedule jobs on various infrastructures.
- Workflow technologies
- (Dockerfile)
- (Mako)
- (Python)
BGC Viewer
A viewer for biosynthetic gene cluster data.
- bioinformatics
- Gene Clusters
- natural products
- + 1
- (CSS)
- (Dockerfile)
- (HTML)
- + 6
BIOMERO
a scalable and extensible image analysis framework
- biaflows
- bioimaging
- biomero
- + 9
- (Dockerfile)
- (Python)
- (Shell)
bird-cloud-gnn
bird-cloud-gnn is a Python package that helps generate a graph representation from point cloud data and fits graph neural networks for classification problem
- Classification
- Graph Neural Network
- Machine learning
- + 2
- (Python)
boatswain
Boatswain is a simple build system for docker images. It is especially useful when you have multiple docker images that depend on each other.
- containers
- docker
- (Dockerfile)
- (Python)
Brei
a minimalist workflow system in Python
- python
- Workflow technologies
- (Nix)
- (Python)
BridgeDbR
R package for the BridgeDb Java library making identifier mapping functionality available in the R environment.
- persistent identifiers
- Statistics
- (HTML)
- (R)
- (TeX)
BridgeDb Webservice
REST API for identifier mapping
- persistent identifiers
- REST API
- webservice
- (CSS)
- (HTML)
- (Java)
- + 1
BroadLineRegions.jl
A fast and flexible toolkit for modeling the broad-line region (BLR) in Julia.
- astronomy
- Astrophysics
- (Julia)
- (TeX)
c3s-magic-wps
Web Processing Service for Climate Data Analysis in the MAGIC project.
- (Dockerfile)
- (Makefile)
- (Python)
- + 1
CAExplorer.jl
A widget that lets you explore the dynamics of a particular cellular automaton that operates on a 5x5 stencil. We use this CA in the context of the carbonate platform modelling toolkit CarboKitten.jl.
- Agent-based modeling
- Interactive Visualization
- Julia Language
- (Julia)
Canadian Advanced Network for Astronomical Research (CANFAR)
The Canadian Advanced Network for Astronomy Research (CANFAR) is a consortium that serves data-intensive storage, access, and processing needs of university groups and centers engaged in astronomy research.
- authenticated
- CANFAR
- condor
- + 6
Canadian Writing Research Collaboratory (CWRC)
CWRC aims to make digital research methods broadly accessible, and to develop an active community of researchers engaged in exploring the potential of collaboration online.
- Canadian culture & history
- cultural studies
- digital humanities
- + 1
- (ActionScript)
- (Batchfile)
- ("Classic ASP")
- + 16
CanDIG CHORD
CHORD is a project to build a federated, Canadian, national data service for privacy- sensitive genomic and related health data. It allows the technologies and services being built by CanDIG and its international partners to be made available to the Canadian health research community more broadly.
- CanDIG
- GA4GH
- genomics
- (Lua)
- (Python)
- (Shell)
CanGeo Project
The goal of this project is to provide a web service providing inland waterbodies initially available on GeoBase and updated using the most recent Landsat-8 imagery.
- canada
- GeoRSS
- imagery
- + 7
CanWIN
CanWIN (Canadian Watershed Information Network) is the data centre for the Centre for Earth Observation Science (CEOS). We support research and education, and inform management, policy and evidence based decision-making from the Nelson River Watershed to the Arctic.
- Arctic
- geospatial
- metadata
- + 4
CarboKitten.jl
A toolkit for forward modelling of stratigraphic record of carbonate platforms, written in Julia.
- Geosciences
- Julia Language
- modelling
- (Julia)
- (Makefile)
Carbon Budget Explorer (CABE)
Web application to visualize countries' carbon emission pathways under various views on fairness.
- (CSS)
- (HTML)
- (JavaScript)
- + 3
caselawnet
Caselawnet constructs citation networks from collections of Dutch case law.
- Big data
- (CSS)
- (HTML)
- ("Jupyter Notebook")
- + 1
CAT
CAT is a collection of tools designed for the construction of various chemical compounds.
- High performance computing
- (Python)
- (Shell)
ccglib
The Complex Common GEMM Library (ccglib) provides mixed-precision matrix-matrix multiplication kernels for complex data.
- CUDA
- GPU
- High performance computing
- + 1
- (C)
- (C++)
- (CMake)
- + 3
CDF2Medmij-Mapping-tool
The CDF2Medmij-Mapping-tool facilitates the seamless transformation of cohort data into MedMij-compliant FHIR formats, enabling the harmonization of diverse datasets within a federated learning infrastructure.
- (CSS)
- (HTML)
- (JavaScript)
- + 2
Ceiba
Ceiba and its command-line interface Ceiba-cli solve the problem of computing, storing, and securely sharing computationally expensive simulation results.
- Optimized data handling
- (Dockerfile)
- (Python)
- (Shell)
- + 1
ceiba-cli
command line interface to interact to interact with the ceiba web server
- Optimized data handling
- (Python)
Cerise
Cerise is a service for running CWL workflows on HPC resources. You add software, tool descriptions, and connection information, then your user runs workflows whenever they want.
- High performance computing
- Optimized data handling
- Workflow technologies
- ("Common Workflow Language")
- (Dockerfile)
- (Makefile)
- + 2
cerulean
A Python 3 library for talking to HPC clusters and supercomputers.
- High performance computing
- SFTP
- SLURM
- + 2
- (Dockerfile)
- (Python)
- (Shell)
Cesium-ncWMS
Web Application that visualizes data stored in the NetCDF format on a globe.
- Visualization
- (CSS)
- (Dockerfile)
- (HTML)
- + 1
cffconvert GitHub Action
GitHub action to validate CITATION.cff files, and convert to other citation formats using the dockerized version of cffconvert
CHAMP-EU
The Cornell-Holland Ab-initio Materials Package (CHAMP) is a quantum Monte Carlo suite of programs for electronic structure calculations. The code is developed by Claudia Filippi and Saverio Moroni, with significant contributions by Ravindra Shinde, N. Renaud, V. Azizi, E. Landinez, and S. Shepard.
- Chemistry
- High performance computing
- Physics
- + 1
- (Assembly)
- (Awk)
- (Berry)
- + 16