All software
Discuit
Python package with the goal to split datasets (e.g. words defined by several variables) into subsets that are as comparable as possible.
- Data
- linguistics
- python
- + 1
- Python
- Shell
Distance explainer
Explainable AI tool for explaining models that create embeddings.
- Embedded spaces
- XAI
- Python
- Jupyter Notebook
- Shell
doc2sentences
A python library to split sentence-wise and convert various document formats to CSV format.
- CSV
- python
- + 1
- Rich Text Format
- Python
- Shell
Drug named entity recognition
A lightweight Python library for finding drug names in a string, otherwise known as named entity recognition (NER) and named entity linking. This library finds only high confidence drugs and doesn't support misspellings at present.
- Data Science
- Medical text
- Natural Language Processing
- + 1
- Jupyter Notebook
- Python
DTBase
DTBase is a starter kit for making your own digital twin. Forking it will get you started with a database, a backend API, infrastructure for data ingress and running models, a basic web frontend, etc. You can then start building the more bespoke features of your digital twin on this foundation.
- Digital Twins
- Python
- HTML
- TypeScript
- + 3
DumME
Scikit-learn compatible version of Mixed-Effects Random Forests
- Python
e2e-Dutch
Coreference resolution for Dutch: automatically links references to the same entity in Dutch written texts.
- Machine learning
- Text analysis & natural language processing
- Python
- C++
- Shell
eEcology-SMS-reciever
If you have birds flying around carrying UvA-BiTS trackers, then this software can save the SMS messages containing the bird's last known positions which are sent by the tracker to the UvA Bird tracking system's central database.
- Real time data analysis
- Python
- Perl
- Mako
- + 1
EEG_age_prediction
Deep learning for age prediction using EEG data
- deep learning
- EEG Signal
- Time Series
- Jupyter Notebook
- Python
- Shell
EEG epilepsy diagnosis
R package developed to extract features from multivariate time series from EEG data and feed them into a random forest classifier.
- Machine learning
- R
- Rebol
Eigencuda
Offload Eigen matrix-matrix multiplications to an Nvidia GPU
- GPU
- High performance computing
- C++
- CMake
eitprocessing
eitprocessing is an open source collaborative python library for the processing and analysis of electrical impedance tomography for clinical use.
- Electrical impedance tomography
- Image processing
- python
- Jupyter Notebook
- Python
- Dockerfile
era5cli
A command line interface to download ERA5 data from the Copernicus Climate Data Store
- Python
Atlas of climate projections
The atlas demonstrates outputs from the probabilistic projection methods developed or assessed in the European Climate Projection system EUCP Horizon2020 project.
- Visualization
- Jupyter Notebook
- Vue
- Python
- + 1
ewatercycle-hype
eWatercycle plugin for HYPE hydrological model
- Python
eWatercycle SURF Research Cloud
Codified instructions for deploying the eWaterCycle platform on the SURF Research Cloud.
- Jinja
- Python
- Shell
ewatercycle-lisflood
eWatercycle plugin for LISFLOOD hydrological model
- Python
ewatercycle-marrmot
eWatercycle plugin for MARRMoT hydrological model
- Python
ewatercycle-pcrglobwb
eWaterCycle plugin for PCRGlobWB hydrological model
- Python
ewatercycle-wflow
eWaterCycle plugin for wflow hydrological model
- Python
ewatercycle-wflowjl
Wflow.jl plugin for eWatercycle.
- Python
- Dockerfile
eWaterLeaf
If you have large amounts of Geospatial grid-based data you would like to explore quickly, eWaterLeaf could be the visualisation for you.
- Visualization
- JavaScript
- HTML
- CSS
Excel-to-fhir
A utility to assist in managing FHIR resources in spreadsheets.
- Data processing
- FHIR
- TypeScript
EXCITED Machine Learning Workflow
An open workflow for creating machine learning models for estimating the global biospheric CO2 exchange.
- CO2
- Data Analysis
- geospatial
- + 4
- Jupyter Notebook
- Python
Experiment Launcher
Generate and launch Jupyter notebooks for your users.
- Workflow technologies
- Python
- Makefile
Explainable embeddings
Experiments with regard to explanation of embedded spaces and multi modal models.
- DIANNA
- Embedded spaces
- Explainable AI
- Jupyter Notebook
- Python
- HTML
- + 1
FAIR Data Point Client
fairdatapoint-client is a simple and elegant library to interact with FAIR Data Point resources from Python, e.g. read and write catalogs, datasets and distributions in an FDP server.
- Python
- Makefile
FHIR to CAPACITY
Retrieves and converts patient records from a FHIR endpoint and uploads it to a CAPACITY registry.
- FAIR
- Inter-operability & linked data
- Jupyter Notebook
- Python
fieldcompare
A Python package for regression testing simulation results. Compare field data supporting various structured formats such as CSV and VTK file formats, through Python API or the command-line interface.
- Data Analysis
- Numerical analysis
- python
- + 1
- Python
FLAME GPU
FLAME GPU is a GPU accelerated simulator for domain independent complex systems simulations. FLAME GPU provides a mapping between a simple description of an agent and its interactions into optimised GPU code. The software abstracts the details and complexity of the GPU away from modellers.
- GPU
- High performance computing
- Multi-scale & multi model simulations
- + 2
flamingo
Compute and filter molecular properties for quantum dot ligands
- High performance computing
- Python
fm128-radar
A python library to write ascii based fm128_radar files to be used in WRFDA
- Python
Forecasting the grid emission factor for the Netherlands
A workflow to produce emission factor forecasts for the electricity mix of the Netherlands, up to 7 days ahead.
- electricity grid
- emission factor
- Forecasting
- + 1
- Python
- Dockerfile
Davidson diagonalization in Fortran
This package contains a Modern Fortran implementation of the Davidson diagonalization algorithms to compute several eigenvalue-eigenvector pairs of a symmetric matrix
- High performance computing
- Fortran
- CMake
- Python
gemdat
a Generalized Molecular Dynamics Analysis Tool
- analysis
- molecular dynamics
- python
- + 1
- Python
- Nix
GenAP
Genetics and Genomics Analysis Platform (GenAP)
- Biology
- genetics
- genomics
- + 5
Geoflow visualizer
Visualizes any type of flow between countries. Takes a CSV as input, applies filtering and aggregation (danfojs) to show relations and data in a number of visualizations (d3.js)
- Visualization
- web-based
- JavaScript
- HTML
- CSS
GitHub action to set up gRPC
To compile C Plus code against gRPC in a GitHub action workflow you need to install it first. This GitHub action compiles or downloads it for you.
- TypeScript
GitHub action to set up singularity
To use Singularity containers in a GitHub action workflow you need to install it first. This GitHub Action downloads, compiles and installs it for you.
- TypeScript
- Shell
GraphvizDotLang.jl
Interface for Graphviz in Julia. This module helps to create graph visualizations programatically in Julia, with Graphviz as a back-end.
- Graphs
- Julia Package
- Visualization
- Julia
- Makefile
grpc4bmi
Run, read and write model state of a numerical simulation written in a variety of languages remotely from Python
- Multi-scale & multi model simulations
- Python
- C++
- Dockerfile
- + 5
H2 scenario explorer
Web application to visualize hydrogen production scenarios as part of HyChain WP1
- energy transition
- renewable energy
- Visualization
- HTML
- JavaScript
- Shell
H2 scenario preprocessing
Preprocessing script to create a database for the H2 scenario explorer
- Data processing
- energy transition
- renewable energy
- Python
- Jupyter Notebook
Components for Haddock3 analysis
React components used by analyse command of haddock3 and haddock3 web application.
- TypeScript
- HTML
- CSS
- + 1
haddock3-ui
The haddock3 web application had several components that could be used outside of the web application. This software contains those components.
- TypeScript
- HTML
- JavaScript
- + 2
Hadrianus scripts
Scripts that transform cultural heritage relational databases into linked data by using cultural heritage ontologies.
- Inter-operability & linked data
- Shell
- Perl
- Python
Harmony
Making harmonisation simple. Social scientists often have to compare items from different questionnaires or datasets. Harmony is a tool that uses natural language processing and generative AI models to help researchers harmonise questionnaire items quickly, even in different languages.
- AI
- Data
- Data Science
- + 10
- Python
- Jupyter Notebook
YODA
YODA is a lightweight C++ and Python library for histogramming and statistical analysis, designed for use in particle physics workflows. It supports reproducible, high-performance data analysis and is the foundation for data handling in tools like Rivet.
- Data Analysis
- High performance computing
- Statistics
- + 1
- C++
- TeX
- Python
- + 2