Software | Research Software Directory

MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae"

Dynamic conditions
feast/famine
Kinetic Modeling
+ 5

4

0

MATLAB-scripts describing a nonlinear steady-state cornering model for an electric city bus

City bus
Electric vehicle
Energy demand
+ 3

3

0

Matlab Scripts underlying the MSc Thesis: Storm Surge Modelling due to Tropical Cyclone Activity

Delft3D
Neural Network
Storm surge
+ 1

1

0

Matlab tools for analysing cell-curvature interactions, used in the publication "Emergent collective organization of bone cells in complex curvature fields".

Curvature
MATLAB
microscopy

1

0

MC_RB_EM_1D

Data and scripts underlying the publication: Estimation of electrical conductivity models using multi-coil rigid-boom electromagnetic induction measurements

electromagnetic induction
frequency domain electromagnetics
inversion

Other
Python
Jupyter Notebook
+ 1

3

0

Metropolis 2 CD&R Study Code

BlueSky
Conflict Detection
Conflict Resolution
+ 3

1

0

MicroDrill (.rgp) file processing / Version 1

iml
microdrill
piles
+ 3

1

0

MLAT

Solver for MLAT localization problem + tracking software

control theory
OBservers
optimization

Other
Python
C++
+ 1

2

0

MLATjs

MLAT application - an application designed to visualize accuracy of MLAT measurments over large areas

Aerospace
data visualization
Localization
+ 2

JavaScript
HTML
Markdown
+ 14

2

0

ML-bias-prediction-MW-Radiances

Code underlying: Bias prediction of microwave radiance observations using machine learning methods

Bias correction
Data Science
HARMONIE-AROME
+ 3

Other
Python
Shell
+ 2

4

0

Model Code of Anisotropic Electrical Conduction in Layered 3D-Prints with Fused Deposition Modeling

3D-printed sensors
3D printing
Anisotropy
+ 3

4

0

Model underlying the publication: Simulation of a fully coupled 3D GIA - Ice Dynamical model for the Antarctic Ice Sheet over a glacial cycle

Antarctic Ice Sheet
Coupled modelling
Glacial Isostatic Adjustment (GIA)
+ 1

3

0

MomentToolbox

Repository containing several implementations for the calculation of Orthogonal Moments

computer vision
Orthogonal moments
pattern recognition

Matlab
Markdown

1

0

Morality is Non-Binary: Building a Pluralist Moral Sentence Embedding Space using Contrastive Learning - code

Contrastive Learning
Morality
Natural Language Processing
+ 1

Python
Other
Markdown
+ 6

3

0

mpcrl-cbf

Source code for the publication: Probabilistically safe and efficient model-based Reinforcement Learning

Control Barrier Function
Model predictive control
Reinforcement learning
+ 1

Python
Other
Markdown
+ 2

1

0

MRF undersampling optimization: Software and code for the publication: Mitigating undersampling errors in Magnetic Resonance Fingerprinting by sequence optimization

MR Fingerprinting
MRI
Optimal experiment design
+ 1

2

0

MScThesis

Code associated to MSc thesis: Using AI/ML to identify propagation characteristics of European heatwaves

AI/ML
Artificial Intelligence (AI)
complex networks
+ 2

1

0

Multi-component MRF reconstruction

Inverse problems
MRF
MR Fingerprinting
+ 2

2

0

MUSICiAn

Data and code underlying the publication: MUSICiAn: Genome-wide Identification of Genes Involved in DNA Repair via Control-Free Mutational Spectra Analysis

compositional data analysis
control-free
CRISPR
+ 6

5

0

NetLogo Agent-Based Model on energy poverty in the switch to a heat network in Delft

Agent-based models
energy justice
energy poverty
+ 3

1

0

NetLogo model: "Agent-Based Simulation of West Asian Urban Dynamics: Impact of Refugees"

agent-based modelling
housing
Lebanon
+ 4

3

0

np_heating

Code for the modeling of heating around plasmonic core–shell nanoparticles

Heat transfer
Photothermal effect
Plasmonic nanoparticles
+ 1

Python
Markdown
Other

2

0

NSG2023-EMinversion

Data and scripts underlying the publication: Global search inversion for electromagnetic induction data using layered models

electromagnetic induction
frequency domain electromagnetics
geophysics

Python
Jupyter Notebook
Other
+ 1

3

0

Numerical model configurations for "A synthetic spring-neap tidal cycle for long-term morphological modelling"

Delft3D-FM
geomorphology;
modelling estimates

4

0

NumPy-based Salt Flux Decomposition

estuaries
Hydrodynamic model
salinity
+ 1

Python
Other
Markdown
+ 1

1

0

optimization_code - Further supporting material for "A hardware-efficient leakage-reduction scheme for quantum error correction with superconducting transmon qubits"

leakage reduction units
quantum error correction
superconducting qubits

3

0

oraqle

Oraqle: A Depth-Aware Secure Computation Compiler

arithmetization
compiler
cryptography
+ 1

Python
Other
Markdown
+ 4

1

0

PARAMOUNT: parallel modal analysis of large datasets

Parallel Processing
proper orthogonal decomposition (POD)
singular value decomposition (SVD)
+ 2

2

0

Particle filter code with an example of subsidence caused by a compacting reservoir

Data assimilation
Particle filter
Reservoir compaction
+ 1

Other
Python
Markdown

1

0

Partile filter code with an example of weight collapse in importance sampling methods

Data assimilation
Importance sampling
Particle method
+ 2

Python
Other
Markdown

1

0

patient-interaction-detection

Python code to detect interaction of medical personnel with the operating table from surveillance videos

2D human poses
Action recognition
Operating table interaction
+ 3

Python
Other
JSON
+ 2

1

0

Permission-based Verification of Red-Black Trees and Their Merging - Code

Deductive verification
magic wand
producer-consumer pattern
+ 3

1

0

perm_map_circuits

Code underlying: Efficient Circuits for Permuting and Mapping Packed Values Across Leveled Homomorphic Ciphertexts

cryptography
graph coloring
homomorphic encryption
+ 1

C++
C
Markdown
+ 2

2

0

PETsChallenge

Code underlying: Privacy-Preserving Membership Queries for Federated Anomaly Detection

Anomaly detection
cryptography
elliptic curves
+ 4

Rust
Markdown
Python
+ 4

8

0

port_data_graphs

Code: Generating Graphs based on Real-World Port Data

Data
graph
port

Jupyter Notebook
JSON
Python
+ 2

1

0

Prediction of Trip Production

The codes associated with the publication: The Role of Spatial Features and Adjacency in Data-driven Short-term Prediction of Trip Production: An Exploratory Study in the Netherlands

demand prediction
graph convolution
residual analysis
+ 3

Jupyter Notebook
Other
Markdown
+ 1

5

0

Predictive_Traffic_Signal_Control

Real-Time Predictive Traffic Signal Control Application for Prototyping

Model predictive control
prediction error
prediction uncertainty
+ 3

Other
C++
C
+ 3

1

0

private-logic-and-mpso

Code underlying: Fast Multi-party Private Set Operations in the Star Topology from Secure ANDs and ORs

cryptography
privacy enhancing technologies
private logic
+ 2

Rust
Other
Markdown

1

0

Proactive Motion Planning Codes for Emergency Collision Avoidance in Highway Scenarios

automated driving
Collision Avoidance
Emergency Scenarios
+ 5

1

0

ProbabilisticValidation

Source code underlying the publication: Privacy-Preserving Data Aggregation with Probabilistic Range Validation

privacy-preserving summation
range validation
secure multi-party computation
+ 1

Matlab
Markdown

2

0

Programs to evaluate superoptimizer STOKE.

compiler
optimization
stochastic

1

0

Propagation model and PIE model, underlying the master thesis: Knowledge in Building with Nature pilot projects

Building with Nature
diffusion
Pilot projects
+ 4

1

0

PSI_dust_size_distribution

Code underlying the publication "Polydisperse Formation of Planetesimals: The dust size distribution in clumps"

hydrodynamics
instabilities
methods: numerical
+ 2

Python
Other
Markdown
+ 1

3

0

Purcell filter simulation scripts

cqed
cross-dephasing
dicarlo
+ 14

1

0

pyBarSim

BarSim
Process-response model
python
+ 2

Python
Jupyter Notebook
Other
+ 2

3

0

pydsol-model

pydsol-model: Python Distributed Simulation Object Library with Predefined Model Objects

Discrete event simulation (DES)
model objects
python
+ 1

Other
HTML
Python
+ 3

1

0

PyNOMAD: A microscopic pedestrian simulation model

Crowd dynamics
Microscopic pedestrian model
Pedestrian modelling

Python
Other
Markdown
+ 1

4

0

pystreed

Source code and data for the paper "Necessary and Sufficient Conditions for Optimal Decision Trees using Dynamic Programming"

dynamic programming
group fairness
optimal decision trees
+ 1

Other
C++
C
+ 3

3

0

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