adhtools
Use adhtools for analyzing Arabic corpora.
- Text analysis & natural language processing
- Visualization
- Workflow technologies
- Jupyter Notebook
- Python
- Common Workflow Language
- + 1
admtools
Estimate age-depth models in geology and use them to transform various types of data (fossil ages, phylogenetic trees, trait evolution of lineages) between the time domain and the stratigraphic domain.
- Age-depth modeling
- Geochronology
- Sedimentology
- + 1
- R
anonymoUUs
Python package to replace identifiable strings in multiple files and folders at once
- de-identification
- python
- text
- Python
- Jupyter Notebook
APE
A CLI, Java API and RESTful API for the automated generation of computational pipelines (scientific workflows) from large collections of computational tools.
- Java
- Program synthesis
- Workflow technologies
- Java
- Common Workflow Language
- ANTLR
asreview-simulation
Command line interface to simulate an ASReview analysis using a variety of prior sampling strategies, classifiers, feature extractors, queriers, balancers, and stopping rules, all of which can be configured to run with custom parameterizations.
- AI
- ASReview
- Automated Systematic Review
- + 4
- Python
haddock3-webapp
Web app to build haddock3 configuration and run it.
- TypeScript
- CSS
- JavaScript
- + 2
i-VRESSE bartender
Bartender is a middleware web service to schedule jobs on various infrastructures.
- Workflow technologies
- Python
- Dockerfile
- Mako
chimp-classifier
The Python package `junglesounds` is a machine learning pipeline for classifying bioacoustic data using machine learning. The pipeline is reusable for other settings and species or vocalization types as long as a certain amount of labeled data has been collected.
- audio
- Audio processing
- bioacoustics
- + 2
- Jupyter Notebook
- Python
- Shell
clumped-processing
Clumped isotope measurement processing script for Thermo Fisher MAT 253 plus isotope ratio mass spectrometer with the Kiel IV
- clumped isotope
- Data Analysis
- mass spectrometry
- + 3
- HTML
- R
clumpedr
Clumpedr aims to facilitate analysis of clumped isotope data. It builds on isoreader which is used to import raw data files from the mass spectrometer, and most of the important data processing parts are based on Huntington et al. 2009 and Daëron et al. 2016.
- Data Analysis
- mass spectrometry
- R
- Makefile
- Rez
DeepRank
Deep learning framework for data mining protein-protein interactions using CNN
- Big data
- Machine learning
- Optimized data handling
- Python
- R
- C
- + 2
DeepRank GNN
DeepRank-GNN is the graph neural network of our DeepRank package. DeepRank GNN allows to train graph neural networks to classify protein-protein interface
- Machine learning
- Protein-Protein Interaction
- Python