OMUSE
A Python environment to interface and couple oceanographic and other earth system model codes.
- High performance computing
- Multi-scale & multi model simulations
- (Batchfile)
- (C)
- (C++)
- + 10
oTree Demo Experiments
oTree demo experiment: Public goods game
- behavioral research
- oTree
- Workflow technologies
- (HTML)
- (JavaScript)
- (Procfile)
- + 1
Parcels
Parcels (Probably A Really Computationally Efficient Lagrangian Simulator) is a set of Python classes and methods to create customisable particle tracking simulations using output from Ocean Circulation models. Parcels can be used to track passive and active particulates such as plastic and fish.
- lagrangian-ocean-modelling
- ocean-circulation-models
- particles
- (Python)
PBI
An open-source python package to identify breakthrough innovations within patents.
- Breakthrough innovations
- jupyter notebooks
- parallel computing
- + 2
- (Python)
pdbtbx-ts
Want to parse Protein Data Bank files in JavaScript
- Optimized data handling
- (JavaScript)
- (Rust)
- (TypeScript)
powerfit
Rigid body fitting of atomic strucures in cryo-electron microscopy density maps
- cryo-electron microscopy
- macromolecular structure
- map fitting
- (C)
- (Cython)
- (Dockerfile)
- + 1
protein-detective
Python package to detect proteins in EM density maps.
- (Python)
protein-quest
Python package to search/retrieve/filter proteins and protein structures
- (Python)
PuReGoMe
Analyzes social media messages for polarity and stance towards governmental COVID-19 measures
- Machine learning
- Social media
- ("Jupyter Notebook")
- (Python)
- (Shell)
pyTAMS
A physics-agnostic implementation of the Trajectory-Adataptive Multilevel Splitting (TAMS) algorithm for predicting transition probability in bi-stable dynamic problems.
- Rare event simulations
- (Python)
- (Shell)
Ricgraph - Research in context graph
With Ricgraph (Research in context graph), you can create a graph from research information that is stored in various source systems. You can explore this graph and discover relations you were not aware of.
- graph
- graph database
- research in context graph
- + 2
- (CSS)
- (Dockerfile)
- (HTML)
- + 5
rocrate-action-recorder
Python package to record calls of Python CLI commands into a Research Object Crate (RO-Crate). Supports RO-Crate 1.1 specification. Specifically the Process Run Crate profile.
- Inter-operability & linked data
- Workflow technologies
- (Python)