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Utrecht University

Utrecht University

Utrecht, The Netherlands

One of the largest and oldest research universities in the Netherlands.

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www.uu.nl
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Software (64)Projects (39)Releases (331)

2026

64 releases
Jul 17, 2026
protein-quest
v1.5.1
Stefan Verhoeven, Anna Engel, Alexandre Bonvin
DOI: 10.5281/zenodo.21413558
Jul 15, 2026
haddock3-webapp
v0.4.0
Stefan Verhoeven, Rodrigo Honorato, Peter Kalverla, Dusan Mijatovic
DOI: 10.5281/zenodo.21380211
Jul 15, 2026
chimp-classifier
v0.1.1
Jelle Treep, Parisa Zahedi, Casper Kaandorp, Heysem Kaya, Joeri Zwerts
DOI: 10.5281/zenodo.21379937
Jul 13, 2026
protein-quest
v1.5.0
Stefan Verhoeven, Anna Engel, Alexandre Bonvin
DOI: 10.5281/zenodo.21337306
Jul 13, 2026
mibitrans
v1.0.1
Jorrit Yvo Bakker, Alraune Zech, Robin Richardson, Jaro Camphuijsen
DOI: 10.5281/zenodo.21335867
Jul 13, 2026
mibitrans
v1.0.0
Jorrit Yvo Bakker, Alraune Zech, Robin Richardson, Jaro Camphuijsen
DOI: 10.5281/zenodo.21335354
Jul 09, 2026
haddock3
2026.7.0
Joao Teixeira, Rodrigo Honorato, Marco Giulini, Alexandre Bonvin, Sarah Alidoost, Victor Reys, Brian Jimenez, Douwe Schulte, Charlotte van Noort, Stefan Verhoeven, Barbara Vreede, SSchott, Regen Tsai
DOI: 10.5281/zenodo.21285072
Jul 09, 2026
haddock3
2026.7.0
Joao Teixeira, Rodrigo Honorato, Marco Giulini, Alexandre Bonvin, Sarah Alidoost, Victor Reys, Brian Jimenez, Douwe Schulte, Charlotte van Noort, Stefan Verhoeven, Barbara Vreede, SSchott, Regen Tsai
DOI: 10.5281/zenodo.21280640
Jun 30, 2026
TulipaEnergyModel
v0.22.2
Abel Soares Siqueira, Diego A. Tejada-Arango, Germán Morales-España, Grigory Neustroev, Juha Kiviluoma, Lauren Clisby, Maaike Elgersma, Ni Wang, Suvayu Ali, Zhi Gao
DOI: 10.5281/zenodo.21068733
Jun 29, 2026
mibitrans
v1.0.0
Jorrit Yvo Bakker, Alraune Zech, Robin Richardson, Jaro Camphuijsen
DOI: 10.5281/zenodo.21035009
Jun 21, 2026
mibiscreen
v0.7.0
Alraune Zech, Sona Aseyednezhad, Robin Richardson, Jaro Camphuijsen
DOI: 10.5281/zenodo.20784578
Jun 21, 2026
mibiscreen
v0.7.0
Alraune Zech, Sona Aseyednezhad, Robin Richardson, Jaro Camphuijsen
DOI: 10.5281/zenodo.20784229
Jun 17, 2026
TulipaEnergyModel
v0.22.1
Abel Soares Siqueira, Diego A. Tejada-Arango, Germán Morales-España, Grigory Neustroev, Juha Kiviluoma, Lauren Clisby, Maaike Elgersma, Ni Wang, Suvayu Ali, Zhi Gao
DOI: 10.5281/zenodo.20734803
Jun 11, 2026
iBridges
v2.1.1
chStaiger, J.P. Mc Farland, Tim, qubixes, Maarten Schermer, simstoica, Dawa Ometto, Terrell Russell, Sietse Snel, jtersteegwur, Carmel Suchard, Jonathan de Bruin, Mark Schenk
DOI: 10.5281/zenodo.20637908
Jun 10, 2026
TulipaEnergyModel
v0.22.0
Abel Soares Siqueira, Diego A. Tejada-Arango, Germán Morales-España, Grigory Neustroev, Juha Kiviluoma, Lauren Clisby, Maaike Elgersma, Ni Wang, Suvayu Ali, Zhi Gao
DOI: 10.5281/zenodo.20625986
May 12, 2026
pyTAMS
v1.1.0
Lucas Esclapez
DOI: 10.5281/zenodo.20144970
May 04, 2026
haddock3
2026.5.0
Joao Teixeira, Rodrigo Honorato, Marco Giulini, Alexandre Bonvin, Sarah Alidoost, Victor Reys, Brian Jimenez, Douwe Schulte, Charlotte van Noort, Stefan Verhoeven, Barbara Vreede, SSchott, Regen Tsai
DOI: 10.5281/zenodo.20028293
Apr 21, 2026
iBridges
v2.1.0
chStaiger, J.P. Mc Farland, Tim, qubixes, Maarten Schermer, simstoica, Dawa Ometto, Terrell Russell, Sietse Snel, jtersteegwur, Carmel Suchard, Jonathan de Bruin, Mark Schenk
DOI: 10.5281/zenodo.19677408
Apr 15, 2026
protein-quest
v1.4.0
Stefan Verhoeven, Anna Engel, Alexandre Bonvin
DOI: 10.5281/zenodo.19594394
Apr 08, 2026
protein-quest
v1.3.0
Stefan Verhoeven, Anna Engel, Alexandre Bonvin
DOI: 10.5281/zenodo.19467681
Mar 27, 2026
protein-quest
v1.2.0
Stefan Verhoeven, Anna Engel, Alexandre Bonvin
DOI: 10.5281/zenodo.19252268
Mar 17, 2026
haddock3
2026.03.0
Joao Teixeira, Rodrigo Honorato, Marco Giulini, Alexandre Bonvin, Sarah Alidoost, Victor Reys, Brian Jimenez, Douwe Schulte, Charlotte van Noort, Stefan Verhoeven, Barbara Vreede, SSchott, Regen Tsai
DOI: 10.5281/zenodo.19067850
Mar 17, 2026
haddock3
2026.3.0
Joao Teixeira, Rodrigo Honorato, Marco Giulini, Alexandre Bonvin, Sarah Alidoost, Victor Reys, Brian Jimenez, Douwe Schulte, Charlotte van Noort, Stefan Verhoeven, Barbara Vreede, SSchott, Regen Tsai
DOI: 10.5281/zenodo.19067538
Mar 04, 2026
TulipaEnergyModel
v0.21.0
Abel Soares Siqueira, Diego A. Tejada-Arango, Germán Morales-España, Grigory Neustroev, Juha Kiviluoma, Lauren Clisby, Maaike Elgersma, Ni Wang, Suvayu Ali, Zhi Gao
DOI: 10.5281/zenodo.18865242
Mar 02, 2026
mibitrans
v0.6.0
Jorrit Yvo Bakker, Alraune Zech, Sona Aseyednezhad, Robin Richardson, Jaro Camphuijsen
DOI: 10.5281/zenodo.18837617
Feb 25, 2026
protein-quest
v1.1.2
Stefan Verhoeven, Anna Engel, Alexandre Bonvin
DOI: 10.5281/zenodo.18771725
Feb 20, 2026
haddock3-webapp
v0.3.14
Stefan Verhoeven, Rodrigo Honorato, Peter Kalverla, Dusan Mijatovic
DOI: 10.5281/zenodo.18713872
Feb 20, 2026
haddock3-ui
v0.3.4
Stefan Verhoeven, Dusan Mijatovic
DOI: 10.5281/zenodo.18713228
Feb 20, 2026
haddock3-ui
v0.3.3
Stefan Verhoeven, Dusan Mijatovic
DOI: 10.5281/zenodo.18713074
Feb 20, 2026
haddock3-ui
v0.3.2
Stefan Verhoeven, Dusan Mijatovic
DOI: 10.5281/zenodo.18712958
Feb 20, 2026
haddock3-webapp
v0.3.13
Stefan Verhoeven, Rodrigo Honorato, Peter Kalverla, Dusan Mijatovic
DOI: 10.5281/zenodo.18711816
Feb 20, 2026
protein-quest
v1.1.1
Stefan Verhoeven, Anna Engel, Alexandre Bonvin
DOI: 10.5281/zenodo.18711064
Feb 17, 2026
TulipaEnergyModel
v0.20.1
Abel Soares Siqueira, Diego A. Tejada-Arango, Germán Morales-España, Grigory Neustroev, Juha Kiviluoma, Lauren Clisby, Maaike Elgersma, Ni Wang, Suvayu Ali, Zhi Gao
DOI: 10.5281/zenodo.18670777
Feb 11, 2026
TulipaEnergyModel
v0.20.0
Abel Soares Siqueira, Diego A. Tejada-Arango, Germán Morales-España, Grigory Neustroev, Juha Kiviluoma, Lauren Clisby, Maaike Elgersma, Ni Wang, Suvayu Ali, Zhi Gao
DOI: 10.5281/zenodo.18613955
Feb 10, 2026
APE
v2.6.0
Vedran Kasalica, Anna-Lena Lamprecht, Mario Frank, Koen Haverkort, Voshol Maurin, Charlotte Grunert
DOI: 10.5281/zenodo.18599763
Feb 06, 2026
protein-quest
v1.1.0
Stefan Verhoeven, Anna Engel, Alexandre Bonvin
DOI: 10.5281/zenodo.18505296
Feb 06, 2026
xarray-regrid
v0.4.2
Bart Schilperoort, Yang Liu, Keith Doore, Sam Levang, Ben Mares
DOI: 10.5281/zenodo.18504296
Jan 20, 2026
mibitrans
v0.5.1
Jorrit Yvo Bakker, Alraune Zech, Sona Aseyednezhad, Robin Richardson, Jaro Camphuijsen
DOI: 10.5281/zenodo.18309822
Jan 20, 2026
mibitrans
V0.5.1
Jorrit Yvo Bakker, Alraune Zech, Sona Aseyednezhad, Robin Richardson, Jaro Camphuijsen
DOI: 10.5281/zenodo.18309062
Jan 14, 2026
mibitrans
v0.5.0
Jorrit Yvo Bakker, Alraune Zech, Sona Aseyednezhad, Robin Richardson, Jaro Camphuijsen
DOI: 10.5281/zenodo.18241738
Jan 06, 2026
TulipaEnergyModel
v0.19.1
Abel Soares Siqueira, Diego A. Tejada-Arango, Germán Morales-España, Grigory Neustroev, Juha Kiviluoma, Lauren Clisby, Maaike Elgersma, Ni Wang, Suvayu Ali, Zhi Gao
DOI: 10.5281/zenodo.18161286
Aug 25, 2025
protein-quest
v1.5.0
Stefan Verhoeven, Anna Engel, Alexandre Bonvin
DOI: 10.5281/zenodo.16941288
Jun 28, 2024
iBridges
v2.1.1
chStaiger, J.P. Mc Farland, Tim, qubixes, Maarten Schermer, simstoica, Dawa Ometto, Terrell Russell, Sietse Snel, jtersteegwur, Carmel Suchard, Jonathan de Bruin, Mark Schenk
DOI: 10.5281/zenodo.12583186
Mar 26, 2024
mibiscreen
v0.7.0
Alraune Zech, Sona Aseyednezhad, Robin Richardson, Jaro Camphuijsen
DOI: 10.5281/zenodo.10878799
Mar 26, 2024
mibitrans
v1.0.1
Jorrit Yvo Bakker, Alraune Zech, Robin Richardson, Jaro Camphuijsen
DOI: 10.5281/zenodo.10877886
Oct 31, 2023
pyTAMS
v1.1.0
Lucas Esclapez
DOI: 10.5281/zenodo.10057843
Sep 20, 2023
TulipaEnergyModel
v0.22.2
Abel Soares Siqueira, Diego A. Tejada-Arango, Germán Morales-España, Grigory Neustroev, Juha Kiviluoma, Lauren Clisby, Maaike Elgersma, Ni Wang, Suvayu Ali, Zhi Gao
DOI: 10.5281/zenodo.8363262
May 31, 2023
haddock3-webapp
v0.4.0
Stefan Verhoeven, Rodrigo Honorato, Peter Kalverla, Dusan Mijatovic
DOI: 10.5281/zenodo.7990850
Oct 03, 2022
chimp-classifier
v0.1.1
Jelle Treep, Parisa Zahedi, Casper Kaandorp, Heysem Kaya, Joeri Zwerts
DOI: 10.5281/zenodo.7137566
Jun 23, 2022
haddock3
2026.7.0
Joao Teixeira, Rodrigo Honorato, Marco Giulini, Alexandre Bonvin, Sarah Alidoost, Victor Reys, Brian Jimenez, Douwe Schulte, Charlotte van Noort, Stefan Verhoeven, Barbara Vreede, SSchott, Regen Tsai
DOI: 10.5281/zenodo.6699227