Life Sciences
KNIME Testflow
Allows you to test KNIME nodes automatically using JUnit.
- Workflow technologies
- Java
MAGMa
MAGMa is an online application for the automatic chemical annotation of mass spectrometry data.
- Big data
- Visualization
- Python
- JavaScript
- Makefile
- + 5
matchms
Python library for fuzzy comparison of mass spectrum data and other Python objects
- Big data
- Optimized data handling
- Python
- TeX
- Batchfile
- + 1
MS2DeepScore
Deep learning based similarity measure of mass spectrometry data.
- Jupyter Notebook
- Python
MUSCLE3
MUSCLE3 is a coupling library for building multiscale simulations out of single-scale models.
- High performance computing
- Multi-scale & multi model simulations
- Fortran
- C++
- Python
- + 4
nanopub
The nanopub library provides a high-level, user-friendly python interface for searching, publishing and retracting nanopublications.
- Inter-operability & linked data
- Python
- Shell
- Batchfile
pbg-ld
Access integrated data on genes and associated traits in plants
- Data Analysis
- genomics
- Inter-operability & linked data
- PLpgSQL
- Shell
- Python
- + 2
pdb2sql
Fast and versatile Python package that leverages SQL queries to parse, manipulate and process biomolecular structure files. The structure files should be in the PDB format and are available on www.rcsb.org.
- Big data
- Optimized data handling
- Python
- TeX
- Makefile
powerfit
Rigid body fitting of atomic strucures in cryo-electron microscopy density maps
- cryo-electron microscopy
- macromolecular structure
- map fitting
- Python
- C
- Cython
- + 1
PSSMGen
Generates consistent PSSM and PDB files for protein-protein complexes
- Big data
- High performance computing
- Optimized data handling
- Python
- Makefile
SIGA.py
Make genome annotations semantically interoperable
- Inter-operability & linked data
- Python
spec2vec
spec2vec is a novel similarity measure for comparing mass spectrometry data, which learns peak representations using Word2Vec.
- Machine learning
- Text analysis & natural language processing
- Python
- Batchfile
- Makefile