Life Sciences
KNIME Testflow
Allows you to test KNIME nodes automatically using JUnit.
- Workflow technologies
- (Java)
MAGMa
MAGMa is an online application for the automatic chemical annotation of mass spectrometry data.
- Big data
- Visualization
- (CSS)
- (Cython)
- (Dockerfile)
- + 5
matchms
Python library for fuzzy comparison of mass spectrum data and other Python objects
- Big data
- Optimized data handling
- (Batchfile)
- (Makefile)
- (Python)
- + 1
mkdocs rich argparse
An MkDocs plugin to generate documentation for a rich argparse parser. It renders commands, sub commands and sub-sub commands which can have rich help messages.
- python
- (Python)
MS2DeepScore
Deep learning based similarity measure of mass spectrometry data.
- ("Jupyter Notebook")
- (Python)
MUSCLE3
MUSCLE3 is a coupling library for building multiscale simulations out of single-scale models.
- High performance computing
- Multi-scale & multi model simulations
- (C)
- (C++)
- (Dockerfile)
- + 4
nanopub
The nanopub library provides a high-level, user-friendly python interface for searching, publishing and retracting nanopublications.
- Inter-operability & linked data
- (JavaScript)
- (Python)
- (Shell)
pbg-ld
Access integrated data on genes and associated traits in plants
- Data Analysis
- genomics
- Inter-operability & linked data
- (Dockerfile)
- (Makefile)
- (PLpgSQL)
- + 2
pdb2sql
Fast and versatile Python package that leverages SQL queries to parse, manipulate and process biomolecular structure files. The structure files should be in the PDB format and are available on www.rcsb.org.
- Big data
- Optimized data handling
- (Makefile)
- (Python)
- (TeX)
powerfit
Rigid body fitting of atomic strucures in cryo-electron microscopy density maps
- cryo-electron microscopy
- macromolecular structure
- map fitting
- (C)
- (Cuda)
- (Cython)
- + 2
protein-detective
Python package to detect proteins in EM density maps.
- (Python)
protein-quest
Python package to search/retrieve/filter proteins and protein structures
- (Python)