Life Sciences
eitprocessing
eitprocessing is an open source collaborative python library for the processing and analysis of electrical impedance tomography for clinical use.
- Electrical impedance tomography
- Image processing
- python
- (Dockerfile)
- ("Jupyter Notebook")
- (Python)
FAIR Data Point
RESTful web service that enables data owners to expose their data sets using rich machine-readable metadata.
- Big data
- Inter-operability & linked data
- (Dockerfile)
- (Makefile)
- (Python)
fairworkflows
A python library for constructing, annotating and publishing scientific workflows described using semantic technologies.
- ("Common Workflow Language")
- (HTML)
- (Python)
- + 1
FastMLC
Detect clusters in for example large collections of DNA or protein sequences, and visualize the results in a web browser.
- Big data
- Machine learning
- Visualization
- (C)
- (C++)
- (CMake)
- + 5
FHIR to CAPACITY
Retrieves and converts patient records from a FHIR endpoint and uploads it to a CAPACITY registry.
- FAIR
- Inter-operability & linked data
- ("Jupyter Notebook")
- (Python)
GGIR
Converts raw data from wearables into insightful reports for researchers investigating human daily physical activity and sleep.
- Big data
- (R)
iScore
A framework and predictor based on support vector machine and random walk graph kernel for scoring protein-protein interfaces.
- Big data
- Machine learning
- Protein-Protein Interaction
- (C++)
- (Cuda)
- (Makefile)
- + 1
KNIME node archetype
Want to write your own KNIME node Then use the KNIME node archetype to generate a node skeleton repository with sample code.
- Workflow technologies
- (Java)
KLIFS KNIME nodes
If you are working in the KNIME worflow platform and need data about your favorite kinase receptor ligand interaction, then these nodes are for you.
- Workflow technologies
- (Java)
- (Scala)
- (Shell)
KNIME node for Kripo
A node for the KNIME workflow systems that allows you to compare different binding sites in proteins with each other.
- Workflow technologies
- (Java)
KNIME molecule viewer nodes
A 3D viewer for large molecules for the KNIME workflow system.
- Visualization
- Workflow technologies
- (CSS)
- (Java)
- (JavaScript)
KNIME ss-TEA node
A node for the KNIME workflow systems that allows you to identify which residue position in a big protein sequence alignment is specific to ligand binding.
- Workflow technologies
- (Java)