Netherlands eScience Center
National platform for the development and application of domain overarching software and methods for the scientific community
AMBER
A real-time pipeline to search for Fast Radio Bursts and other transient radio sources.
- Big data
- GPU
- High performance computing
- + 1
- C++
- CMake
Citation File Format
The Citation File Format lets you provide citation metadata for software or datasets in plaintext files that are easy to read by both humans and machines.
- FAIR
- Inter-operability & linked data
- Python
Kernel Tuner
Kernel Tuner greatly simplifies the development of highly-optimized and auto-tuned CUDA, OpenCL, and C code, supporting many advanced use-cases and optimization strategies that speed up the auto-tuning process.
- Big data
- GPU
- High performance computing
- + 3
- Python
- Cuda
MAGMa
MAGMa is an online application for the automatic chemical annotation of mass spectrometry data.
- Big data
- Visualization
- Python
- JavaScript
- Makefile
- + 5
sv-callers
Highly portable parallel workflow to detect structural variants in cancer genomes.
- Big data
- High performance computing
- Workflow technologies
- Python
- Shell
KNIME Pharmacophore
A plugin for the KNIME workflow system that adds a Pharmacophore data type and nodes to read, write, and align them.
- Workflow technologies
- Java
KNIME PLANTS
A node for the KNIME workflow system that allows you to use the PLANTS protein-ligand docking algorithm.
- Workflow technologies
- Java
- Mustache
KNIME Python node archetype
Want to write your own KNIME node wrapping a Python library. Then use the KNIME Python node archetype to generate a node skeleton repository with sample code
- Big data
- Workflow technologies
- Java
- Python
KNIME Python wrapper
If you are developing a KNIME node which calls some Python code, then the KNIME Python wrapper can help you.
- Workflow technologies
- Java
- Python
KNIME Silicos-it nodes
A node for the KNIME workflow systems that allows you to use the Silicos-it software to filter or align molecules.
- Workflow technologies
- Java
SyGMa
SyGMa provides fast and lightweight predictions of human metabolites to support discovery scientists design better and safer drugs
- Workflow technologies
- Python
3D-e-Chem Virtual Machine
A freely available Virtual Machine encompassing tools, databases, and workflows for cheminformaticians, including new resources developed for ligand binding site comparisons and GPCR research.
- Inter-operability & linked data
- Workflow technologies
- Shell
- Smarty