KNIME molecule viewer nodes

A 3D viewer for large molecules for the KNIME workflow system.

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What KNIME molecule viewer nodes can do for you

  • Provides cheminformatics trying to model proteins within KNIME a way to view them
  • Adds nodes to KNIME to visualize proteins, small molecules and pharmacophores
  • Adds support to KNIME to handle viewing big molecules
  • Used to compare pharmacophore generation tools
  • Used to check ligand repurposing
Keywords
Programming languages
  • Java 54%
  • JavaScript 45%
  • CSS 1%
License
</>Source code

Participating organisations

Netherlands eScience Center
Vrije Universiteit Amsterdam
Radboud University Nijmegen
Life Sciences
Life Sciences
Natural Sciences & Engineering
Natural Sciences & Engineering

Reference papers

Mentions

Testimonials

For such a purposes I used to use 2 very useful nodes (namely Ligands Viewer and Ligands and Proteins Viewer) that were part of the great 3D-e-Chem 3 extension and that could even be integrated into KNIME components.
https://forum.knime.com/t/3d-ligand-and-protein-visualization-from-knime-5-x/75016

Contributors

AK
Albert J. Kooistra
VU University Amsterdam

Related projects

3D-e-Chem

Efficient exploitation of the massive amount of modern-day life science data

Updated 21 months ago
Finished