Software | Research Software Directory

Dive

Interactively explore millions of 2D and 3D data points in your browser, without the need to install anything.

Big data
Machine learning
Visualization

CSS
HTML
JavaScript
+ 1

2

16

MapReader

MapReader is an end-to-end computer vision (CV) pipeline for exploring and analyzing images at scale.

computer vision
digital humanities
geospatial
+ 4

Dockerfile
Python
Shell
+ 1

7

16

pbg-ld

Access integrated data on genes and associated traits in plants

Data Analysis
genomics
Inter-operability & linked data

Dockerfile
Makefile
PLpgSQL
+ 2

4

16

Code underlying the publication: "RESTAD: Reconstruction and Similarity Transformer for time series Anomaly Detection"

Anomaly detection
Radial Basis Function (RBF) kernel
Time Series
+ 1

Markdown
Other
Python
+ 1

3

15

Software package C1 belonging to the paper: Cold pool dynamics shape the response of extreme rainfall events to climate change

iterative rain cell tracking
precipitation patterns
rainfall intensity

3

15

ChemSpaX: A Python tool for local chemical space exploration

ChemSpaX is a Python package that can be used for local chemical space exploration of any structure. This is done by placing substuents on a pre-defined skeleton. A substituent can be chosen from an existing library and can be attached to the skeleton.

catalysis
Chemistry
python

Python
Shell

3

15

KMCS v1.0.0: Software underlying the publication “Morphology Evolution during Lithium-Based Vertically Aligned Nanocomposite Growth”

design of experiments
kinetic Monte Carlo
multi-material simulation
+ 4

3

14

petcluster

Petrochemical cluster analysis tool

complex networks
Industrial cluster
industrial ecology
+ 2

Markdown
Other
Python

4

14

What does a Text Classifier Learn about Morality? An Explainable Method for Cross-Domain Comparison of Moral Rhetoric - code

Ethics
explainable artificial intelligence
Morality
+ 3

Markdown
Other
Python

7

14

Texcavator

Texcavator is a search engine and text mining application for creating word cloud and time line visualizations of large text corpora.

Text analysis & natural language processing
Visualization

CSS
HTML
JavaScript
+ 1

2

14

Blade Element Momentum Theory Code for Positive and Negative Thrust Propellers

BEM
BEMT
Blade Element Momentum Theory
+ 2

1

13

Microscopy data, code and analysis underlying the publication "Optical STEM detection for scanning electron microscopy"

Electron Detection
Instrumentation Development
Scanning Electron Microscopy
+ 2

Jupyter Notebook
Markdown
Other
+ 2

6

13

Software described in the paper "Hyperspectral Python: HypPy"

hyperspectral imaging
Image processing
minerals
+ 1

6

13

TraViA: a Traffic data Visualization and Annotation tool in Python

HighD
NGSIM
pNEUMA
+ 2

1

13

COVID-19 Integrated Surveillance Data in Italy

COVID-19 integrated surveillance data provided by the Italian National Institute of Health and processed via UnrollingAverages.jl to deconvolve the weekly simple moving averages.

Clinical Data
Computational Epidemiology
COVID-19
+ 16

Julia
Python
TeX

2

13

gammalearn

Deep Learning for Imaging Cherenkov Telescopes Data Analysis

cta
deep learning
Gamma-ray telescopes
+ 1

Dockerfile
Python

4

13

Xenon

If you are using remote machines to do your computations, and don’t feel like learning and implementing many different APIs, Xenon is the tool for you.

batch-job
distributed computing
FTP
+ 11

Batchfile
Java
Shell

11

13

Code for the publication: Vibration-induced friction modulation for a general frequency of excitation

Average friction
Mechanical vibration
Method of direct separation of motion
+ 1

1

12

Dataset for Nanowire solar cell above the radiative limit

nanowire
Shockley-Queisser limit
Solar cell devices

5

12

dmpcrl-concept

Software for publication: Multi-agent reinforcement learning via distributed MPC as a function approximator

ADMM
alternating direction method of multipliers
distributed model predictive control
+ 2

Markdown
Other
Python

1

12

fedKMeans

Code supporting chapter 4 of the PhD thesis: Federated K-Means Clustering.

Big data
Clustering
federated learning
+ 3

2

12

Framework for the publication: MirrorLabs – creating similar learning environments for students all over Europe for human-robot coproduction

Augmented Reality
Interactive Visualization
robotics
+ 2

2

12

Global analysis of DNA methylation in hepatocellular carcinoma via a whole-genome bisulfite sequencing approach

DNA methylation analyses
prognosis model
WGBS (Whole Genome Bisulfite Sequencing)

1

12

Hanson's Model in Frequency Domain - Tonal Noise of Rotors in Uniform Inflow

Hanson's model
Propeller Aeroacoustics
Propeller Noise
+ 1

1

12

Python notebook to generate Figure 3 Panel C from: "Adaptability and evolution of the cell polarization machinery in budding yeast"

death ratios
jupyter notebook
microscopy
+ 1

1

12

Python notebook to generate the cell sizes changes across yeast mutants (Figure 3 Panel D from paper: "Adaptability and evolution of the cell polarization machinery in budding yeast")

cell sizes averages
jupyter notebook
microscopy
+ 1

1

12

Software supporting the publication: Background Electromagnetic Noise Received via Ionospheric Propagation in a Remote Rural Location in Spain (set 2)

ambient noise
electromagnetic noise
ionosphere
+ 3

4

12

Cross-perspective Topic Modeling

An application that uses cross-perspective topic modeling to extract topics and opinions from text and provides insight into how they change over time.

Text analysis & natural language processing

Jupyter Notebook
Python
Shell

3

12

ENCORE

Enhancing Computational Reproducibility

Communication and replication
Computational science
computer science
+ 2

HTML
Python
TeX

2

12

nanopub

The nanopub library provides a high-level, user-friendly python interface for searching, publishing and retracting nanopublications.

Inter-operability & linked data

JavaScript
Python
Shell

3

12

Code and data belonging to the publication "Closed-loop Aspects of Data-Enabled Predictive Control"

closed loop identification
Data-driven control
Data-enabled Predictive Control
+ 2

Markdown
Matlab
Other

4

11

HCOMP2022_ARCHIE

Analogy-based explanation evaluation dataset for HCOMP 2022 paper "It Is Like Finding a Polar Bear in the Savannah! Concept-level AI Explanations with Analogical Inference from Commonsense Knowledge."

Analogy
Commonsense Knowledge
Concept-level Explanation
+ 1

Markdown
Other
Python

5

11

Numerical models and datasets concerning the publication:"Electrocatalytic reaction-driven flow"

COMSOL multiphysics software
Simulation

1

11

Scripts and data accompanying publication: "Manure matters: Prospects for regional banana-livestock integration for sustainable intensification in South-West Uganda"

cattle
crop-livestock integration
East African Highland Banana
+ 5

1

11

SIMULINK model for Lifetime Analysis of IGBT Power Modules in Passively Cooled Tidal Turbine Converters

IGBT modules
lifetime analysis
power electronic converters
+ 1

1

11

DALES

DALES is a large-eddy simulation code designed for studies of the physics of the atmospheric boundary layer, including convective and stable boundary layers as well as cloudy boundary layers.

C
CMake
Fortran
+ 8

24

11

ExploreASL

ExploreASL is a pipeline and toolbox for image processing and statistics of arterial spin labeling perfusion MR images. It is designed as a multi-OS, open-source, collaborative framework that facilitates cross-pollination between image processing method developers and clinical investigators.

ASL
Image processing
MRI

C
MATLAB
Python

7

11

FastMLC

Detect clusters in for example large collections of DNA or protein sequences, and visualize the results in a web browser.

Big data
Machine learning
Visualization

C
C++
CMake
+ 5

5

11

PanVA

Variant Analysis within Pangenomes.

API
Data Analysis
pangenomics

CSS
Dockerfile
HTML
+ 6

2

11

SIGA.py

Make genome annotations semantically interoperable

Inter-operability & linked data

Python

2

11

Code underlying the publication: Maintenance Optimization for Multi-Component Systems with a Single Sensor

Condition-based maintenance
Inspection planning
Maintenance
+ 2

Other
Python

4

10

ML-MoCap - Controller and Camera module Images

human movement
markerless
MarkerLess Motion Capture (ML-MoCap)
+ 1

1

10

OFF framework, code underlying the publication A dynamic open-source model to investigate wake dynamics in response to wind farm flow control strategies

dynamic parametric wake model
surrogate wake model
wind farm flow control
+ 1

CSS
HTML
JavaScript
+ 7

2

10

MDStudio

A tool to run molecular dynamics workflows.

High performance computing
Real time data analysis
Workflow technologies

CSS
Dockerfile
HTML
+ 5

4

10

Turing Data Safe Haven

Data Safe Haven is an open-source framework for creating Trusted Research Environments (TREs) to analyse sensitive data. It provides a set of scripts that will allow you to deploy, administer and use your own TRE on Microsoft Azure cloud.

Cloud
cloud storage
Infrastructure as code
+ 3

Dockerfile
Jinja
PLpgSQL
+ 4

29

10

Virtual Human Platform

The Virtual Human Platform (VHP) was developed through the VHP4Safety project to support chemical and pharmaceutical safety testing. VHP provides you with human-relevant tools and models for precision safety evaluation, helping you reduce reliance on laboratory animals.

toxicology

CSS
Dockerfile
HTML
+ 4

0

10

[Artifact] Deductive Verification of Parameterized Embedded Systems modeled in SystemC

Deductive verification
embedded systems
parameterized systems
+ 2

6

9

Code and data underlying the publication: Symmetrization of 2D Polygonal Shapes Using Mixed-Integer Programming

Design
Digitalization
Shape optimization
+ 1

Automake
C
C++
+ 3

3

9