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Cover image for DoE2Vec

DoE2Vec

DoE2Vec is a self-supervised approach to learn exploratory landscape analysis features from design of experiments. The model can be used for downstream meta-learning tasks such as learninig which optimizer works best on a given optimization landscape.

  • Machine learning
  • optimization
  • python
  • Python
  • R
  • Makefile
1
9
Cover image for pdb2sql

pdb2sql

Fast and versatile Python package that leverages SQL queries to parse, manipulate and process biomolecular structure files. The structure files should be in the PDB format and are available on www.rcsb.org.

  • Big data
  • Optimized data handling
  • Python
  • TeX
  • Makefile
2
8
Cover image for PSSMGen

PSSMGen

Generates consistent PSSM and PDB files for protein-protein complexes

  • Big data
  • High performance computing
  • Optimized data handling
  • Python
  • Makefile
2
6
Cover image for eAstroViz

eAstroViz

This tool can convert and visualize radio astronomy measurement sets, as well as most LOFAR intermediate data products. It also performs RFI mitigation.

  • LOFAR
  • radio astronomy
  • RFI
  • Java
  • C++
  • Cuda
  • + 3
1
4
Cover image for LUE

LUE

LUE is software for storing and manipulating large amounts of information for large numbers of objects. The software is useful, and currently mainly used, in the context of environmental modelling of biological and physical systems, represented by agents and fields.

  • Agent-based modeling
  • environmental modelling
  • field based modelling
  • + 6
  • C++
  • Python
  • CMake
  • + 6
3
4
Cover image for SalientDetector-python

SalientDetector-python

If you want to automate your object detection or photo-identification image tasks in an easy way with free open-source software, the SalientDetector-Python is the tool for you

  • Image processing
  • Jupyter Notebook
  • Python
  • Makefile
2
3
Cover image for eEcology Tracker calendar

eEcology Tracker calendar

Calendar overview with daily statistics of GPS-trackers used to track bird movements.

  • Visualization
  • Python
  • Makefile
  • JavaScript
  • + 5
1
2
Cover image for Entangled

Entangled

Entangled makes literate programming easier. It keeps markdown and program source in sync. This makes it more convenient to extend and debug your literate code.

  • Literate Programming
  • open science
  • python
  • + 2
  • Python
  • C++
  • Makefile
  • + 2
5
2
Cover image for Ricgraph - Research in context graph

Ricgraph - Research in context graph

With Ricgraph (Research in context graph), you can create a graph from research information that is stored in various source systems. You can explore this graph and discover relations you were not aware of.

  • graph
  • graph database
  • research in context graph
  • + 2
  • Python
  • Makefile
  • JavaScript
  • + 5
1
2
Cover image for Analizo

Analizo

Analizo is a free, multi-language, extensible source code analysis. It supports the extraction and calculation of a fair number of source code metrics, generation of dependency graphs, and software evolution analysis.

  • Software Evolution
  • Source Code Metrics
  • Static Analysis
  • Perl
  • C++
  • C
  • + 7
2
1
Cover image for byteparsing

byteparsing

Parser library for reading custom binary files from Python.

  • Big data
  • Multi-scale & multi model simulations
  • Optimized data handling
  • Jupyter Notebook
  • Python
  • C++
  • + 5
2
1
Cover image for Emo-spectre

Emo-spectre

Interactive visualization and exploration of multi modal time-series data and video

  • Visualization
  • Workflow technologies
  • PLpgSQL
  • Vue
  • JavaScript
  • + 5
5
1