All software
APE
A CLI, Java API and RESTful API for the automated generation of computational pipelines (scientific workflows) from large collections of computational tools.
- Java
- Program synthesis
- Workflow technologies
- ANTLR
- Common Workflow Language
- Java
LinkAhead
Open Source Research Data Management Software
- Data
- Electronic Lab Notebook
- ETL
- + 9
- ANTLR
- C++
- CSS
- + 9
QTLTableMiner++
Extract gene-trait associations from scientific literature
- Inter-operability & linked data
- Text analysis & natural language processing
- Java
- Shell
Xenon
If you are using remote machines to do your computations, and don’t feel like learning and implementing many different APIs, Xenon is the tool for you.
- batch-job
- distributed computing
- FTP
- + 11
- Batchfile
- Java
- Shell
Bacting
Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.
- bioinformatics
- Cheminformatics
- Java
- TeX
Xenon command line interface
A command line interface for the Xenon library that allows you to use remote machines to do your computations.
- High performance computing
- Batchfile
- Common Workflow Language
- Dockerfile
- + 2
xtas
the eXtensible Text Analysis Suite
- Text analysis & natural language processing
- Java
- Python
- Shell
Code and data supporting the publication: ZIMFLUX: Single molecule localization microscopy with patterned illumination in 3D
Code and data supporting the publication: ZIMFLUX: Single molecule localization microscopy with patterned illumination in 3D
- modulated excitation
- SMLM
- Super-Resolution Microscopy
- + 2
- C
- C#
- C++
- + 7
Source code for INCS (Iterative Nonlinear Contrast Source)
Source code for INCS (Iterative Nonlinear Contrast Source)
- INCS
- medical ultrasound
- microbubbles
- + 1
- Automake
- C
- Fortran
- + 5
eEecology Classification
Automatic classification of accelerometer data using a supervised learning approach.
- Machine learning
- Batchfile
- CSS
- HTML
- + 3
eAstroViz
This tool can convert and visualize radio astronomy measurement sets, as well as most LOFAR intermediate data products. It also performs RFI mitigation.
- LOFAR
- radio astronomy
- RFI
- C
- C++
- Cuda
- + 3
Xenon gRPC server
Run applications remotely via a gRPC interface.
- High performance computing
- Java