All software

Pylinac

Pylinac provides TG-142 quality assurance (QA) tools to Python programmers in the field of therapy and diagnostic medical physics.

pymcc

Module that reads PTW mephisto mcc files from watertank scans or array files. pymcc relies on Pandas and uses a Pandas DataFrame to store the measurement values within the class objects.

PyMedPhys

PyMedPhys is an open-source Medical Physics Python library built by an open community that values code sharing, review, improvement, and learning from each other.

pynetdicom

A Python library for DICOM network communication. Implements the DICOM network protocol to allow sending and receiving DICOM files.

pyOrthanc

PyOrthanc makes it easy to work with DICOM medical images stored on Orthanc servers using Python - instead of dealing with the DICOM protocol directly or creating complex code to interact with Orthanc's REST API.

pyPENELOPEtools

pyPENELOPEtools is an open-source software to facilitate the use of the Monte Carlo code PENELOPE and its main programs such as PENEPMA

pyQAserver

A Python-based server for performing Quality Assurance tests. Provides a web interface for managing and running tests.

PyRadiomics

PyRadiomics is an open-source python package for the extraction of Radiomics features from medical imaging

pyRadPlan

Related to matRad. Aims to facilitate AI integration into treatment planning workflows (research only).

Pyspextools

Pyspextools is a collection of python tools for the SPEX X-ray spectral fitting package.

PyStemmusScope

A python package for running the STEMMUS-SCOPE model

pyTAMS

A physics-agnostic implementation of the Trajectory-Adataptive Multilevel Splitting (TAMS) algorithm for predicting transition probability in bi-stable dynamic problems.

python-pcl

Use the industry-standard Point Cloud Library from within Python.

PyXenon

Python wrapper for the Xenon programming interface to various compute and storage resources.

pyZacros

A Python library to handle Kinetic Monte Carlo codes.

qalcore

Core Library of the Quantum Application Lab

QALMA

A Matlab based toolkit with GUI for quantitative analysis of Quality Assurance tests for Medical Linear Accelerators in Radiation Therapy.

QANS

QANS (Questionnaire And Nomination Software) is a collection of software components to enable longitudinal research using sociometric (peer nomination, peer ranking) surveys.

QATrack+

QATrack+ is a fully configurable, free, and open source (MIT License) web application for managing QA data for radiation therapy and medical imaging equipment

qc2

Quantum Computing for Quantum Chemistry

q-cardIA

Quantitative cardiac image analysis

QMCBlip

QMCBlip allows to couple Quantum Monte Carlo Simulations with Machine Learning Force Fields to accelerate Molecular Dynamics simulations

QMCTorch

Use and design neural network ansatz wave function for real-space quantum Monte Carlo simulations of molecular systems.

quafing

Questionnaire analysis using Fisher Information Non-Parametric Embedding. Explore high-dimensional continuous and discrete questionnaire data sets.

Quantum Newton Raphson

The Quantum Newton Raphson package allows to leverage quantum computing routines to accelerate the Newton-Raphson algorithm.

qubols

qubols allows to solve linear system using a QUBO approach that can be deployed on quantum annealers

qubops

qubops allows to solve polynomial system of equations using a QUBO approach that can be deployed on quantum annealers

QUICKLB

QUICKLB is a very efficient library that sacrifices optimality for speed. It shines in distributed applications that have unpredictable unbalanced computational peaks in their domains.

Radiam

Radiam helps researchers keep track of their data, regardless of where it is stored. There are multiple components working together, and most of them run within Docker containers.

rcoins

Identify continuous lines in a spatial network.

rcrisp Shiny app

Shiny web app for the rcrisp software package.

rdfsolve

Extract RDF schemas from SPARQL endpoints and convert to multiple formats (VoID, LinkML, JSON-LD).

ReaxPro framework ontology

This application ontology is dedicated to the ReaxPro framework for the multi-scale modeling of catalytic materials.

ReaxPro wrappers

This repository is a collection of wrappers used in the ReaxPro project. It holds wrappers for the Amsterdam Modeling Suite (AMS) and Zacros.

REE-HDSC

Software developed in the project REE-HDSC (Recognizing Extracted Entities for the Historical Database Suriname Curacao, 2023-2024) of the Radboud University Nijmegen and the Netherlands eScience Center.

Reliable

Reliable is a browser-based planning tool for academic research, thesis work, teaching, administration, and other forms of complex, long-horizon individual work. It helps users map the full scope of their work, estimate realistic task durations, and align plans with actual time constraints.

Remote BMI

Remote BMI allows you to communicate with Basic Model Interface enabled numerical models using a RESTful API

repl-session

A script that runs a session on any Read-Eval-Print-Loop (REPL), following a description in a JSON file. The output JSON contains the commands entered including the results from the REPL session. This can be useful to drive documentation tests or literate programming tasks.

Research Lifecycle Approach using Islandora

Islandora 8 is an open-source software framework designed to help organizations collaboratively manage and discover digital assets using a best-practices, standards-based preservation framework.

research made readable tool

Research Portal for Secure Data Discovery, Access, and Collaboration

A Research Portal that can address these different usage models, while serving as website and gateway for authorized researchers to capture, query, and visualize patient data; communicate, collaborate and share datasets; and access support and training resources. platforms.

RESTful APE

RESTful API for the APE (Automated Pipeline Explorer) library.

ReSurfEMG

ReSurfEMG is an open source collaborative python library for analysis of respiratory electromyography (EMG). The library includes functions for pre-processing, analysis and machine learning.

ReSurfEMG-dashboard

A dashboard for visualizing and analyzing respiratory EMG signal, making use of the ReSurfEMG library

Review Argumentation at Scale

This package contains a scalable pipeline to perform argument reasoning on a dataset of product reviews, to identify the highest quality ones. By tuning both lossy and lossless parameters, it is possible to tune the pipeline to foster the accuracy of the computation or its speed.

RickView

Easy to deploy low-resource stand-alone RDF knowledge graph browser written in Rust. No SPARQL endpoint needed!

Rivet

Rivet is a toolkit for validation and analysis of Monte Carlo event generators in particle physics. It provides a library of reusable analysis components and a large collection of published analyses, enabling precise, reproducible comparisons between theory and experimental data.

ROE

Designed for patient-specific prescription determination using personalized dose-response curves. Visualizes TCP and NTCP.