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1324 software items. Page 25 of 28. 48 items per page.
1153-1200 of 1324

ParticlePhaseSpace

A set of tools for processing and analysing particle phase space files. Designed for use with Monte Carlo simulations, particularly for proton therapy.

  • Treatment Planning and dosimetry
  • (Batchfile)
  • ("Jupyter Notebook")
  • (Makefile)
  • + 1
0
0

PartitionedArrays.jl

This package provides distributed (a.k.a. partitioned) vectors and sparse matrices like the ones needed in distributed finite differences, finite volumes, or finite element computations.

  • GPU
  • High performance computing
  • Julia Package
  • (Julia)
  • (Shell)
13
0

PattyAnalytics

Library for aligning and scaling one point cloud to an other.

  • Big data
  • Point Cloud
  • (Python)
9
0

PBI

An open-source python package to identify breakthrough innovations within patents.

  • Breakthrough innovations
  • jupyter notebooks
  • parallel computing
  • + 2
  • (Python)
4
0

pdbtbx-ts

Want to parse Protein Data Bank files in JavaScript

  • Optimized data handling
  • (JavaScript)
  • (Rust)
  • (TypeScript)
2
0

PDFtoAria

A Cscript for converting PDF documents into a format that can be imported into Varian ARIA. Automates the process of adding documents to ARIA.

  • Software Engineering and Data Infrastructure
  • (C#)
0
0

PENELOPE

The computer code system penelope (version 2024) performs Monte Carlo simulation of coupled electron-photon transport in arbitrary materials for a wide energy range, from a few hundred eV to about 1 GeV.

  • Treatment Planning and dosimetry
0
0

Petri Nets on Hyperledger

Decentralized coordination of multi-domain workflows using Hyperledger Fabric blockchain and Petri nets.

  • Blockchain
  • hyperledger
  • Petri net
  • + 1
  • (CSS)
  • (HTML)
  • (JavaScript)
  • + 1
0
0

PhysicalConstants.jl

Collection of fundamental physical constants with uncertainties. It supports arbitrary-precision constants.

  • Julia Package
  • Physics
  • (Julia)
1
0

PinPath

PinPath is an R package and web-based application for visualizing omics data, such as genomics, transcriptomics, proteomics, and metabolomics, onto pathway diagrams from WikiPathways, KEGG, and custom GPML/KGML files.

  • bioinformatics
  • KEGG
  • Omics
  • + 2
  • (HTML)
  • (R)
3
0

PlanCheck

A Varian Eclipse scripting plugin for treatment plan verification. Automates the process of checking a plan against a set of rules.

  • Quality Assurance
  • (C#)
0
0

PlanEO Dashboard

Provides an interactive interface for visualizing geographical data relevant to the MINE-DD project, including pathogen distribution, risk factors, and demographic analysis through both point data and raster overlays.

  • Data Analysis
  • Demographic Analysis
  • Geographic Visualization
  • + 8
  • (CSS)
  • (Dockerfile)
  • (HTML)
  • + 5
3
0

PlanUNC

A program for performing dosimetry calculations in radiotherapy. The program is proprietary and not open source.

  • Software Engineering and Data Infrastructure
0
0

Plastimatch

Focuses on high-performance volumetric registration, segmentation, and image processing of volumetric medical images. Supports DICOM and DICOM-RT import/export.

  • Imaging and Image Processing
  • (C)
  • (C++)
  • (CMake)
  • + 2
0
0

Platalea

Platalea contains deep neural network architectures for modeling spoken language from multiple sources at once: audio, and simultaneously images, text or video. This can be used to learn about what different context sources add to the language acquisition process.

  • (Python)
3
0

PlatiPy

Aims to simplify use, visualization, processing, and analysis of medical images. Built on SimpleITK, VTK.

  • Imaging and Image Processing
  • (CSS)
  • (Dockerfile)
  • (HTML)
  • + 4
0
0

PortPy

PortPy, short for Planning and Optimization for Radiation Therapy, is an initiative aimed at creating an open-source Python library for cancer radiotherapy treatment planning optimization.

  • Treatment Planning and dosimetry
  • (CSS)
  • (Python)
0
0

prfmodel

A modern Python implementation for population receptive field modelling.

  • GPU
  • Neuroscience
  • optimization
  • + 2
  • (Python)
2
0

PRIMO

Simulates clinical linear accelerators and estimates absorbed dose distributions. Combines GUI with PENELOPE and DPM Monte Carlo codes.

  • Treatment Planning and dosimetry
0
0

protein-detective

Python package to detect proteins in EM density maps.

  • (Python)
3
0

PSRDADA python

If you want to do astrophysics in python, this could come in handy. Connect to a radiotelescope and process data in real-time.

  • (Cython)
  • (Makefile)
  • (Python)
3
0

Pure3D

A web platform for exploring 3D digital collections and editions in cultural heritage.

  • (CSS)
  • (HTML)
  • (JavaScript)
  • + 4
2
0

pyanno4RT

pyanno4rt is a Python package for conventional and outcome prediction model-based inverse photon and proton treatment plan optimization, including radiobiological and machine learning (ML) models for tumor control probability (TCP) and normal tissue complication probability (NTCP).

  • Treatment Planning and dosimetry
  • (Python)
0
0

pybacting

Python wrapper around Bacting.

  • Biology
  • Chemistry
  • python
  • (Just)
  • (Python)
2
0

PyBeam-QA

A Python library for performing beam quality assurance tests in radiotherapy. The software is in an early stage of development.

  • Quality Assurance
  • (HTML)
  • (JavaScript)
  • (Python)
  • + 1
0
0

pyCERR

pyCERR provides convenient data structure for imaging metadata and their associations. Utilities are provided to to extract, transform, organize metadata and visualize results of image processing for image and dosimetry features, image processing for AI model training and inference.

  • Treatment Planning and dosimetry
  • ("Jupyter Notebook")
  • (Python)
  • (Shell)
0
0

Pycoeus

Pycoeus is a command-line tool and python package designed for exploration of multiband geospatial datasets. It lets the user iteratively train and retrain segmentation models in seconds. A combination of Deep learning and traditional machine learning is used, leveraging the best of both methods.

  • deep learning
  • gis
  • Machine learning
  • + 2
  • (Python)
2
0

Pydicer

Eases conversion of Radiotherapy DICOM data to research-ready format (NIfTI). Provides analysis functionality.

  • Imaging and Image Processing
  • (Makefile)
  • (Python)
  • (Shell)
0
0

pydicom

Reads, modifies, and writes DICOM data in a "pythonic" way. General-purpose framework, does not handle specifics of individual SOP classes.

  • Software Engineering and Data Infrastructure
  • (Makefile)
  • (Python)
  • (Shell)
0
0

PyELSEPA

Python wrapper for ELSEPA, a numeric code for computing elastic scattering cross-sections for electrons and positrons off neutral atoms.

  • (Dockerfile)
  • (Python)
1
0

pyESAPI

A Python wrapper for the Varian Eclipse Scripting API (ESAPI). Allows scripting of Eclipse functions using Python.

  • Software Engineering and Data Infrastructure
  • (PowerShell)
  • (Python)
0
0

Pylinac

Pylinac provides TG-142 quality assurance (QA) tools to Python programmers in the field of therapy and diagnostic medical physics.

  • Imaging and Image Processing
  • (Python)
  • (Shell)
0
0

pymcc

Module that reads PTW mephisto mcc files from watertank scans or array files. pymcc relies on Pandas and uses a Pandas DataFrame to store the measurement values within the class objects.

  • Treatment Planning and dosimetry
  • (Python)
0
0

PyMedPhys

PyMedPhys is an open-source Medical Physics Python library built by an open community that values code sharing, review, improvement, and learning from each other.

  • Quality Assurance
  • (Batchfile)
  • (JavaScript)
  • (Python)
  • + 2
0
0

pynetdicom

A Python library for DICOM network communication. Implements the DICOM network protocol to allow sending and receiving DICOM files.

  • Software Engineering and Data Infrastructure
  • (Python)
  • (Shell)
0
0

pyOrthanc

PyOrthanc makes it easy to work with DICOM medical images stored on Orthanc servers using Python - instead of dealing with the DICOM protocol directly or creating complex code to interact with Orthanc's REST API.

  • Software Engineering and Data Infrastructure
  • (Dockerfile)
  • (Python)
0
0

pyPENELOPEtools

pyPENELOPEtools is an open-source software to facilitate the use of the Monte Carlo code PENELOPE and its main programs such as PENEPMA

  • Treatment Planning and dosimetry
  • (Python)
0
0

pyQAserver

A Python-based server for performing Quality Assurance tests. Provides a web interface for managing and running tests.

  • Quality Assurance
  • (CSS)
  • (HTML)
  • (JavaScript)
  • + 2
0
0

PyRadiomics

PyRadiomics is an open-source python package for the extraction of Radiomics features from medical imaging

  • Imaging and Image Processing
  • (Batchfile)
  • (C)
  • (CMake)
  • + 4
0
0

pyRadPlan

Related to matRad. Aims to facilitate AI integration into treatment planning workflows (research only).

  • Artificial Intelligence
  • Treatment Planning and dosimetry
  • (Python)
0
0

Pyspextools

Pyspextools is a collection of python tools for the SPEX X-ray spectral fitting package.

  • Astrophysics
  • Software
  • Spectroscopy
  • (Python)
1
0

PyStemmusScope

A python package for running the STEMMUS-SCOPE model

  • (Dockerfile)
  • ("Jupyter Notebook")
  • (Python)
  • + 1
5
0

pyTAMS

A physics-agnostic implementation of the Trajectory-Adataptive Multilevel Splitting (TAMS) algorithm for predicting transition probability in bi-stable dynamic problems.

  • Rare event simulations
  • (Python)
  • (Shell)
1
0

python-pcl

Use the industry-standard Point Cloud Library from within Python.

  • Big data
  • High performance computing
  • (C)
  • (C++)
  • (Makefile)
  • + 2
4
0

PyXenon

Python wrapper for the Xenon programming interface to various compute and storage resources.

  • (Batchfile)
  • (Python)
  • (Shell)
3
0

pyZacros

A Python library to handle Kinetic Monte Carlo codes.

  • (Python)
  • (Shell)
2
0

qalcore

Core Library of the Quantum Application Lab

  • python
  • Quantum Computing
  • ("Jupyter Notebook")
  • (Python)
  • (Shell)
2
0

QALMA

A Matlab based toolkit with GUI for quantitative analysis of Quality Assurance tests for Medical Linear Accelerators in Radiation Therapy.

  • Quality Assurance
  • (MATLAB)
0
0