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1289 software items. Page 23 of 27. 48 items per page.
1057-1104 of 1289

mibibio

Collection of microbial analysis workflows to investigate microbiological community structure, characteristics and their degradation potential.

2
0

mibiremo

MiBiReMo (Microbiome Bioremediation Reaction Module) is a Python interface to the PhreeqcRM library. The package is designed to be coupled with transport models to simulate reactive transport in porous media, with applications in environmental and geochemical engineering.

  • (Makefile)
  • (Python)
3
0

mibiscreen

Data handling and screening package of the Microbiome based remediation Prediction Tool

  • Data Analysis
  • Multi-scale & multi model simulations
  • python
  • ("Jupyter Notebook")
  • (Python)
  • (Shell)
4
0

mibitrans

A collection of analytical and semi-semianalytical solutions for hydrogeological transport phenomena

  • Multi-scale & multi model simulations
  • python
  • (Python)
  • (Shell)
4
0

Mimetic Operators Library Enhanced (MOLE)

MOLE is a high-quality (C++ & MATLAB/Octave) library of high-order mimetic operators to solve partial differential equations. It provides discrete analogs of vector calculus operators: Gradient, Divergence, Laplacian, Bilaplacian, and Curl. These operators satisfy local and global conservation laws.

  • Mathematical Software
  • Mimetic Operators
  • Partial differential equations
  • (C)
  • (C++)
  • (CMake)
  • + 3
0
0

minimism

A minimal distributed MPI port from UFEMISM, used as a basis for UFEMISM2.0

  • Finite volume method
  • ice sheet
  • MPI
  • + 1
  • (Fortran)
  • (Makefile)
  • (Mathematica)
  • + 4
4
0

MINTED

MINTED (Making Identifiers Necessary for Tracking Evolving Data) aims to apply dataset citation Digital Object Identifiers (DOIs) and researcher ORCIDs into ONC's Oceans 3.0 digital infrastructure.

  • oceanography
  • Oceans
  • persistent identifiers
1
0

MIPAV

Enables quantitative analysis and visualization of medical images. Cross-platform (Java).

  • Imaging and Image Processing
0
0

MIROpt

OpenTPS is an open-source treatment planning system (TPS) for research in radiation therapy and proton therapy. It was developed in Python with a special focus on simplifying contribution to the core functions to let the user develop their own features.

  • Treatment Planning and dosimetry
0
0

MITK

Combines ITK and VTK with an application framework. Aims to reduce effort for interactive medical image analysis applications.

  • Imaging and Image Processing
  • (Batchfile)
  • (C)
  • (C++)
  • + 8
0
0

Mixed Meal Model SBML

This software generates the SBML version of the Mixed Meal Model, for predicting the glucose level evolution after the intake of a meal.

  • Digital Twins
  • modelling
  • (Python)
  • (Shell)
4
0

mkdocs rich argparse

An MkDocs plugin to generate documentation for a rich argparse parser. It renders commands, sub commands and sub-sub commands which can have rich help messages.

  • python
  • (Python)
1
0

ModuleMixins.jl

Make your Julia modules composable! With ModuleMixins you can design larger programs in Julia, building out components by merging structure definitions from smaller components, similar to designing an [Entity Component System](https://en.wikipedia.org/wiki/Entity_component_system).

  • Entity Component System
  • Julia Package
  • Metaprogramming
  • + 2
  • (Julia)
1
0

MONAI

Project MONAI is revolutionizing medical imaging through a comprehensive ecosystem of AI tools

  • Artificial Intelligence
  • (C)
  • (C++)
  • (Cuda)
  • + 4
0
0

MonteRay

CPU MC dose calculation engine, capable of simulating therapeutic proton, helium, and carbon ion beams. Uses pre-computed nuclear event database.

  • Treatment Planning and dosimetry
0
0

MorphoDynamX

An integrated image processing and simulation platform

0
0

MorphoMechanX

FEM simulation add-on for MorphoDynamX

0
0

MPET

This software is designed to run simulations of batteries with porous electrodes using porous electrode theory, which is a volume-averaged, multiscale approach to capture the coupled behavior of electrolyte and active material within electrodes

  • (Dockerfile)
  • (Python)
10
0

mri_distortion_toolkit

A toolkit to correct geometric distortion in MR images. Includes tools for converting DICOM to NIfTI, and generating distortion correction maps.

  • Imaging and Image Processing
  • (Batchfile)
  • (CSS)
  • (HTML)
  • + 3
0
0

MSS-IMProv

An Integrative Modeling Platform

  • mass spectrometry
  • Modeling
  • proteins
1
0

mudicom

A Python library for interacting with DICOM files. Provides a simpler, more intuitive interface than other libraries.

  • Imaging and Image Processing
  • (Python)
0
0

MUSIMAN

In summary, the MUSIMAN package is a software tool to ease the parallelization of simulations run with the Monte Carlo code PENELOPE 2014

  • Treatment Planning and dosimetry
  • (MATLAB)
0
0

NanopubJL

JupyterLab extension to aid in searching and publishing of Nanopublications in a python notebook

  • Inter-operability & linked data
  • (CSS)
  • (Dockerfile)
  • (JavaScript)
  • + 3
2
0

Nature Counts

The NatureCounts platform allows users to collect, archive, interpret and access wildlife data to advance the understanding of bird populations across the Western Hemisphere.

  • bird monitoring
  • conservation science
  • open data
  • (CSS)
  • (R)
2
0

nedextract

nedextract is a python library that helps you to extract information on person names and organisations mentioned in Dutch (annual report) PDF files.

  • ("Jupyter Notebook")
  • (Python)
  • (Shell)
1
0

NetCDF2LittleR

An application to convert NetCDF files to the Little-R format

  • (CMake)
  • (Fortran)
  • (Pascal)
1
0

Network Simulation Engine

A modular financial risk management and policy-laboratory tool: simulates financial network topologies and translates them into liquidity outcomes, enabling evaluation of early-warning triggered dynamic buffers and central bank backstops for mitigating systemic liquidity shortfalls.

  • Financial networks
  • Liquidity
  • python
  • + 3
1
0

NeuroAnalyzer

NeuroAnalyzer is a Julia toolbox for analyzing neurophysiological data.

  • EEG
  • fNIRS
  • MEG
  • + 2
1
0

NeuroGym

NeuroGym is a curated collection of neuroscience tasks with a common interface. The goal is to facilitate the training of neural network models on neuroscience tasks.

  • deep learning
  • Machine learning
  • Neuroscience
  • + 3
  • (Python)
7
0

nnU-Net

nnU-Net is a semantic segmentation method that automatically adapts to a given dataset. It will analyze the provided training cases and automatically configure a matching U-Net-based segmentation pipeline.

  • Artificial Intelligence
  • (Python)
  • (Shell)
0
0

NPLinker eScience Workshop GenMetMine Materials

These materials were used as a part of the NPLinker eScience Workshop on Natural Product Genome & Metabolome Mining: https://www.wur.nl/en/research-results/chair-groups/plant-sciences/bioinformatics/teaching/nplinker_workshop.htm Most materials are available in a format facilitating its reuse.

  • Data mining
  • genomics
  • Inter-operability & linked data
  • + 4
0
0

Nunaliit

The Nunaliit Atlas Framework aims to make it easy to tell stories and highlight relationships between many different forms of information from a variety of sources, using maps as a central way to connect and interact with the data.

  • atlas
  • cartography
  • database
  • + 6
  • (C)
  • (CSS)
  • ("Go Template")
  • + 10
1
0

OBiBa Agate

Agate is a web application that offers users related services to the OBiBa software stack.

  • authentication
  • Epidemiology
  • (Batchfile)
  • (FreeMarker)
  • (HTML)
  • + 7
8
0

OBiBa Mica

Mica is OBiBa's software application that is used to create data web portals for large-scale epidemiological studies or multiple-study consortia.

  • euCanSHare, software integration
  • (Batchfile)
  • (CSS)
  • (FreeMarker)
  • + 7
8
0

OBiBa Opal

Opal is OBiBa's core data repository application for epidemiological studies.

  • euCanSHare, software integration
  • (ANTLR)
  • (Batchfile)
  • (HTML)
  • + 8
8
0

Ocean Networks Canada

By bringing data to the surface, ONC provides ocean intelligence to scientists, governments, organizations, and citizens. Ocean data are archived, processed and made freely available via ONC’s data management system, Oceans 3.0.

1
0

OCTSEG

Analyze retinal optical coherence tomography images.

  • Image processing
  • (M)
  • (MATLAB)
2
0

OMG Dosimetry

A Python package for performing dosimetry calculations and quality assurance tests. Provides a simple API for common dosimetry tasks.

  • Quality Assurance
  • (Batchfile)
  • (Python)
0
0

One button compute

Web application for running a CWL workflow on a bunch of files.

  • Optimized data handling
  • Workflow technologies
  • ("Common Workflow Language")
  • (HTML)
  • (Python)
2
0

OnkoDICOM

Cross-platform. Provides DVH output, clinical data capture (radiomics), Pyradiomics output, anonymization, ROI manipulation.

  • Imaging and Image Processing
  • (Python)
0
0

OpenDA

Open data assimilation toolbox. OpenDA is an open interface standard for a set of tools to quickly implement data-assimilation and calibration for arbitrary numerical models.

  • Optimized data handling
  • (Batchfile)
  • (Brainfuck)
  • (C)
  • + 23
4
0

Open Matrices Stimulus Set (omss)

omss is a Python package for generating matrix reasoning puzzles, inspired by Raven's Progressive Matrices. It allows users to generate an unlimited number of customizable puzzles across a range of difficulty levels by setting rules for visual elements.

  • Intelligence
  • Matrices
  • python
  • + 1
  • (Python)
4
0

OpenRefine

OpenRefine is a powerful free, open source tool for working with messy data: cleaning it; transforming it from one format into another; and extending it with web services and external data.

  • Data Analysis
  • Data Science
  • (Batchfile)
  • (CSS)
  • (HTML)
  • + 8
0
0

OpenREGGUI

Image processing, open-source platform for research in proton therapy

  • Treatment Planning and dosimetry
0
0

OpenSim Creator

A UI for building OpenSim models

  • biomechanical engineering
  • opensim
  • Simulation
  • (AppleScript)
  • (Batchfile)
  • (C)
  • + 5
2
0

OpenTPS

OpenTPS is an open-source treatment planning system (TPS) for research in radiation therapy and proton therapy.

  • Treatment Planning and dosimetry
  • (C)
  • (C++)
  • (Cuda)
  • + 2
0
0

Orange3 Argument Mining Add-on

This open-source Python package facilitates the processing, analysis, and visualization of argument corpora. Additionally, It offers user-friendly GUIs integrated into the Orange3 scientific workflow platform, enabling non-programmers to utilize its capabilities.

  • Argument mining
  • Natural Language Processing
  • python
  • + 1
  • (Python)
3
0

Orange3 Story Navigator

Add-on providing quantitative textual story analysis based on principles in narrative psychology

  • narrative psychology
  • orange3
  • text analysis
  • (Python)
6
0