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1324 software items. Page 23 of 28. 48 items per page.
1057-1104 of 1324

Ldot

Workflow and participant registration support

  • GDPR
  • participant information
  • storage
  • + 2
4
0

leakybucket

A Python BMI leaky bucket model 🪣

  • (Dockerfile)
  • ("Jupyter Notebook")
  • (Python)
3
0

LHAPDF

LHAPDF (The Les Houches Accord PDFs) is a standardised library for accessing parton distribution functions (PDFs) in high-energy physics. It provides a common interface to a wide range of PDF sets, enabling consistent and reproducible predictions in collider simulations and analyses.

  • Collider physics
  • Deep Inelastic Scattering
  • Interpolation
  • + 1
  • (C++)
  • (Cython)
  • (M4)
  • + 2
1
0

libGPML

libGPML is an open-source Java library for working with Graphical Pathway Markup Language (GPML).

  • Graphical Pathway Markup Language
  • Java
  • (HTML)
  • (Java)
  • (TeX)
3
0

LibreQDA

An open-source web-based tool for qualitative data analysis.

  • CAQDAS
  • collaborative analysis
  • digital humanities
  • + 8
3
0

LifelinesCSV2CDF

This tool converts Lifelines cohort study data from CSV to CDF/JSON, a format used in the MyDigiTwin project. Lifelines tracks health data over time, but variables are often scattered across files, making analysis difficult. CDF organizes data per participant, enabling FHIR/MedMij-compliant analysis

  • Data Harmonization
  • Lifelines
  • MyDigiTwin
  • (Python)
  • (Shell)
1
0

LimeSurvey

LimeSurvey is a free and open-source online survey platform in 80+ countries worldwide. It offers features like conditional logic, question branching, customizable templates, multilingual support, and GDPR compliance.

  • questionnaire
  • survey
  • (Batchfile)
  • (CSS)
  • (Hack)
  • + 10
0
0

LinacQA

LinaQA (pronounced Linakwa) is a GUI frontend for pylinac and pydicom.

  • Quality Assurance
  • (Batchfile)
  • (CSS)
  • (JavaScript)
  • + 2
0
0

LLview

LLview is a set of software components to monitor clusters that are controlled by a resource manager and a scheduler system.

  • High performance computing
  • HPC
  • Monitoring
  • + 2
  • (Perl)
  • (Python)
  • (Shell)
4
0

lofar-ld

Publish LOFAR catalog as Linked Data.

  • Inter-operability & linked data
  • (Makefile)
6
0

Lofar Predictive Maintenance

Software tool to cluster outputs of different baselines within a specific observation. There are often over 1500 baselines in a single observation which takes a lot of time to inspect. This tool makes inspecting output of baselines more productive.

1
0

Lokum

Deploy GlusterFS, Docker, Spark and JupyterHub services on bare-metal cluster.

  • Big data
  • High performance computing
  • Optimized data handling
  • (Dockerfile)
  • (HCL)
  • (Python)
  • + 2
1
0

LombScargle.jl

Compute Lomb-Scargle periodogram, suitable for unevenly sampled data. It supports multi-threading

  • astronomy
  • Astrophysics
  • Julia Package
  • (Julia)
1
0

LXCat

An open-access website for collecting, displaying, and downloading electron and ion scattering cross sections for modeling low temperature plasmas.

  • Optimized data handling
  • (CSS)
  • (Dockerfile)
  • (JavaScript)
  • + 2
5
0

LXCat schema

Type, JSON schema and validator for cross section set used in low-temperature plasma community.

3
0

m4ma

An R package containing C++ implementations to speed up the simulation and parameter estimation of the Predictive Pedestrian model.

  • geospatial
  • High performance computing
  • Real time data analysis
  • (C)
  • (C++)
  • (R)
5
0

MAAS-PlanScoreCard

A Varian Eclipse scripting plugin to generate a 'scorecard' for treatment plan quality. Assesses plan quality based on pre-defined metrics.

  • Treatment Planning and dosimetry
  • (C#)
0
0

Magic Castle

Magic Castle aims to recreate the HPC user experience in public clouds.

  • CERN
  • HPC
  • research software
  • + 1
  • (HCL)
  • (Python)
  • (Shell)
14
0

marzipan

Deploying clusters of VMs on bare metal using OpenNebula, provisioning, and running services made easy by fully configurable scalable automation

  • High performance computing
  • (Dockerfile)
  • (Python)
  • (Shell)
  • + 1
2
0

Mass Spec Studio for Clinical Proteomics

A fusion of the popular OpenMS suite of functionality with the powerful Mass Spec Studio. Users have access to OpenDIA and OpenPRM to support large scale processing of clinical proteomics data sets.

  • mass spectrometry
  • proteins
  • proteomics
1
0

MatRad

Matrad is an open source software for radiation treatment planning of intensity-modulated photon, proton, and carbon ion therapy.

  • Treatment Planning and dosimetry
  • (C++)
  • (MATLAB)
  • (TeX)
0
0

μ-awk

This is a tiny Python implementation of a line processor with Awk-like semantics. You write a set of regex-based rules. The program loops through the lines of some input file, running the matching functions on lines that match.

  • python
  • Text analysis & natural language processing
  • (Python)
1
0

MCsquare

Fast Monte Carlo dose calculation algorithm for the simulation of PBS proton therapy.

  • Treatment Planning and dosimetry
  • (Batchfile)
  • (C)
  • (Makefile)
  • + 1
0
0

Medical Image Processing in Python

This lesson introduces some specifics of medical image processing with popular Python libraries such as SimpleITK, Pydicom and NiBabel. Reconstruction algorithms, image and DICOM anonymization, registration, segmentation, data augmentation and generative AI are covered.

  • Image processing
  • medical
  • radiology
4
0

med-imagetools

Aims to provide transparent and reproducible medical image processing pipelines in Python. Focuses on subject-based machine learning and processing DICOMs into deep learning-ready format.

  • Imaging and Image Processing
  • (Dockerfile)
  • ("Jupyter Notebook")
  • (Python)
0
0

Metasyn

Metasyn is a Python tool for synthetic data generation. It is geared towards use-cases where privacy is of the utmost importance. Metasyn emphasizes transparency and auditability of the outputs.

  • disclosure
  • generative models
  • metadata
  • + 3
  • (Dockerfile)
  • (Python)
4
0

Metriplane

Open-source Python software for workcell state observation, incident evidence, deterministic record/replay, and reproducible regression testing.

  • ArUco
  • benchmark evidence
  • computer vision
  • + 12
  • (CSS)
  • (Dockerfile)
  • (HTML)
  • + 3
1
0

mibibio

Collection of microbial analysis workflows to investigate microbiological community structure, characteristics and their degradation potential.

2
0

mibiremo

MiBiReMo (Microbiome Bioremediation Reaction Module) is a Python interface to the PhreeqcRM library. The package is designed to be coupled with transport models to simulate reactive transport in porous media, with applications in environmental and geochemical engineering.

  • (Makefile)
  • (Python)
3
0

mibiscreen

Data handling and screening package of the Microbiome based remediation Prediction Tool

  • Data Analysis
  • Multi-scale & multi model simulations
  • python
  • ("Jupyter Notebook")
  • (Python)
  • (Shell)
4
0

mibitrans

A collection of analytical and semi-semianalytical solutions for hydrogeological transport phenomena

  • Multi-scale & multi model simulations
  • python
  • (Python)
  • (Shell)
4
0

Mimetic Operators Library Enhanced (MOLE)

MOLE is a high-quality (C++ & MATLAB/Octave) library of high-order mimetic operators to solve partial differential equations. It provides discrete analogs of vector calculus operators: Gradient, Divergence, Laplacian, Bilaplacian, and Curl. These operators satisfy local and global conservation laws.

  • Mathematical Software
  • Mimetic Operators
  • Partial differential equations
  • (C)
  • (C++)
  • (CMake)
  • + 3
0
0

minimism

A minimal distributed MPI port from UFEMISM, used as a basis for UFEMISM2.0

  • Finite volume method
  • ice sheet
  • MPI
  • + 1
  • (Fortran)
  • (Makefile)
  • (Mathematica)
  • + 4
4
0

MINTED

MINTED (Making Identifiers Necessary for Tracking Evolving Data) aims to apply dataset citation Digital Object Identifiers (DOIs) and researcher ORCIDs into ONC's Oceans 3.0 digital infrastructure.

  • oceanography
  • Oceans
  • persistent identifiers
1
0

MIPAV

Enables quantitative analysis and visualization of medical images. Cross-platform (Java).

  • Imaging and Image Processing
0
0

MIROpt

OpenTPS is an open-source treatment planning system (TPS) for research in radiation therapy and proton therapy. It was developed in Python with a special focus on simplifying contribution to the core functions to let the user develop their own features.

  • Treatment Planning and dosimetry
0
0

MITK

Combines ITK and VTK with an application framework. Aims to reduce effort for interactive medical image analysis applications.

  • Imaging and Image Processing
  • (Batchfile)
  • (C)
  • (C++)
  • + 8
0
0

Mixed Meal Model SBML

This software generates the SBML version of the Mixed Meal Model, for predicting the glucose level evolution after the intake of a meal.

  • Digital Twins
  • modelling
  • (Python)
  • (Shell)
4
0

mkdocs rich argparse

An MkDocs plugin to generate documentation for a rich argparse parser. It renders commands, sub commands and sub-sub commands which can have rich help messages.

  • python
  • (Python)
1
0

MM Field Studio

MM Field Studio is a free iPad application for mixed methods field data collection, developed by ReliCheck. It captures each quantitative rating with the participant's explanation, records consent before each session, transcribes spoken answers on the device, and hands complete cases to MM Studio.

  • qualitative data analysis
0
0

MM Studio

MM Studio is mixed methods research software for macOS, by ReliCheck. Also available in the browser. 18 of its 19 workflow steps are integration steps. It pairs quantitative and qualitative results in joint displays with evidence-strength ratings and produces an APA-formatted integrated report.

0
0

ModuleMixins.jl

Make your Julia modules composable! With ModuleMixins you can design larger programs in Julia, building out components by merging structure definitions from smaller components, similar to designing an [Entity Component System](https://en.wikipedia.org/wiki/Entity_component_system).

  • Entity Component System
  • Julia Package
  • Metaprogramming
  • + 2
  • (Julia)
1
0

MONAI

Project MONAI is revolutionizing medical imaging through a comprehensive ecosystem of AI tools

  • Artificial Intelligence
  • (C)
  • (C++)
  • (Cuda)
  • + 4
0
0

MonteRay

CPU MC dose calculation engine, capable of simulating therapeutic proton, helium, and carbon ion beams. Uses pre-computed nuclear event database.

  • Treatment Planning and dosimetry
0
0

MorphoDynamX

An integrated image processing and simulation platform

0
0

MorphoMechanX

FEM simulation add-on for MorphoDynamX

0
0

MPET

This software is designed to run simulations of batteries with porous electrodes using porous electrode theory, which is a volume-averaged, multiscale approach to capture the coupled behavior of electrolyte and active material within electrodes

  • (Dockerfile)
  • (Python)
10
0

mri_distortion_toolkit

A toolkit to correct geometric distortion in MR images. Includes tools for converting DICOM to NIfTI, and generating distortion correction maps.

  • Imaging and Image Processing
  • (Batchfile)
  • (CSS)
  • (HTML)
  • + 3
0
0