All software

Pipeline for HCG-16 Project

This repository hosts a pipeline to reproduce the data reduction and analysis of Jones et al. 2019.

R3BRoot

Software for simulations and data analysis of Reactions with Relativistic Radioactive Beams (R3B) experiments at GSI/FAIR

SKAO Science Data Challenge 1 Solution Workflow

The SKA Science Data Challenge 1 (SDC1, https://astronomers.skatelescope.org/ska-science-data-challenge-1/) tasked participants with identifying and classifying sources in synthetic radio images. Here we present an environment and workflow for producing a solution to this challenge that can easil...

timewise-sup: The Timewise Subtraction Pipeline v0.5.1

The Timewise Subtraction Pipeline produces mid-infrared difference photometry based on measurements by the WISE satellite

ZenodoCI

The library is intended to be part of a complete CI pipeline. This stage deploys to Zenodo the files found in the ./build directory, configured in the .gitlab-ci.yml file

Atlas of climate projections

The atlas demonstrates outputs from the probabilistic projection methods developed or assessed in the European Climate Projection system EUCP Horizon2020 project.

Evil-DICOM

Simple-to-use Clibrary for reading and manipulating DICOM files. Dot Net Standard Compliant.

ewatercycle-hype

eWatercycle plugin for HYPE hydrological model

eWatercycle SURF Research Cloud

Codified instructions for deploying the eWaterCycle platform on the SURF Research Cloud.

ewatercycle-lisflood

eWatercycle plugin for LISFLOOD hydrological model

ewatercycle-marrmot

eWatercycle plugin for MARRMoT hydrological model

ewatercycle-pcrglobwb

eWaterCycle plugin for PCRGlobWB hydrological model

ewatercycle-wflow

eWaterCycle plugin for wflow hydrological model

ewatercycle-wflowjl

Wflow.jl plugin for eWatercycle.

eWaterLeaf

If you have large amounts of Geospatial grid-based data you would like to explore quickly, eWaterLeaf could be the visualisation for you.

Excel-to-fhir

A utility to assist in managing FHIR resources in spreadsheets.

EXCITED Machine Learning Workflow

An open workflow for creating machine learning models for estimating the global biospheric CO2 exchange.

Experiment Launcher

Generate and launch Jupyter notebooks for your users.

Explainable embeddings

Experiments with regard to explanation of embedded spaces and multi modal models.

Fabolous-v16

Fabolus is a Windows-based app designed to assist radiation therapy prepare bolus meshes for 3D printing

FAIR Data Point Client

fairdatapoint-client is a simple and elegant library to interact with FAIR Data Point resources from Python, e.g. read and write catalogs, datasets and distributions in an FDP server.

fairtool

Fairtool is a simple Python package to make your computational materials data FAIR. It comes with a command-line interface to transform the raw output into both machine-readable and human-readable outputs. It optionally allows the user to visualize the entire dataset locally on a web server.

FHIR to CAPACITY

Retrieves and converts patient records from a FHIR endpoint and uploads it to a CAPACITY registry.

fieldcompare

A Python package for regression testing simulation results. Compare field data supporting various structured formats such as CSV and VTK file formats, through Python API or the command-line interface.

fine-data-generator

FLAME GPU

FLAME GPU is a GPU accelerated simulator for domain independent complex systems simulations. FLAME GPU provides a mapping between a simple description of an agent and its interactions into optimised GPU code. The software abstracts the details and complexity of the GPU away from modellers.

flamingo

Compute and filter molecular properties for quantum dot ligands

flashgamma

Code written for personal educational purposes. Performed similarly to proprietary gamma analysis codes internally, but not guaranteed bug-free.

FLUKA

The FLUKA code is a general purpose Monte Carlo code for the interaction and transport of hadrons, leptons, and photons from keV (with the exception of neutrons, tracked down to thermal energies) to cosmic ray energies in any material.

fm128-radar

A python library to write ascii based fm128_radar files to be used in WRFDA

FoCa

FoCa is an in-house modular treatment planning system, developed entirely in MATLAB, which includes forward dose calculation of proton radiotherapy plans in both active and passive modalities as well as a generic optimization suite for inverse treatment planning.

fo-dicom

Targets.NET Standard 2.0. High-performance, asynchronous API.

Folklore Clinical Variant Interpretation MCP

Folklore MCP 1.5.0: read-only GRCh38 germline variant evidence, ClinGen gene-disease associations and biomedical literature.

Forecasting the grid emission factor for the Netherlands

A workflow to produce emission factor forecasts for the electricity mix of the Netherlands, up to 7 days ahead.

Davidson diagonalization in Fortran

This package contains a Modern Fortran implementation of the Davidson diagonalization algorithms to compute several eigenvalue-eigenvector pairs of a symmetric matrix

FOWT-ML

Machine learning kit for Hybrid testing in Floating Offshore Wind Turbines (FOWT).

FRED

GPU MC dose engine capable of simulating therapeutic protons, electrons and carbon ions.

FRoG

Independent dose and LETd prediction tool for proton therapy, GPU-accelerated, sandbox environment, supports variable RBE models. Not for clinical use.

Fundamentals of Natural Language Processing (NLP) in Python

This lesson teaches the fundamentals of Natural Language Processing (NLP) in Python.

GalerkinToolkit.jl

GalerkinToolkit is a high-performance finite element (FE) toolbox fully implemented in the Julia programming language. It provides modular building blocks to easily implement custom finite element codes to solve partial differential equations (PDEs) using a variety of numerical schemes.

GATE

GATE is open source, based on Geant4, and developed by the international OpenGATE collaboration

GEANT4

Toolkit for the simulation of the passage of particles through matter. Its areas of application include high energy, nuclear and accelerator physics.

gemdat

a Generalized Molecular Dynamics Analysis Tool

Geoflow visualizer

Visualizes any type of flow between countries. Takes a CSV as input, applies filtering and aggregation (danfojs) to show relations and data in a number of visualizations (d3.js)

ggmice

The {ggmice} package provides visualization tools for incomplete and imputed data in R, compatible with {mice} and {ggplot2}.

GitHub action to set up gRPC

To compile C Plus code against gRPC in a GitHub action workflow you need to install it first. This GitHub action compiles or downloads it for you.

GitHub action to set up singularity

To use Singularity containers in a GitHub action workflow you need to install it first. This GitHub Action downloads, compiles and installs it for you.

GraphvizDotLang.jl

Interface for Graphviz in Julia. This module helps to create graph visualizations programatically in Julia, with Graphviz as a back-end.