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13-24 of 36

jaspProcess

A JASP implementation of the PROCESS macro for SPSS

Data Analysis
Statistics
Visualization

Turing Data Safe Haven

Data Safe Haven is an open-source framework for creating Trusted Research Environments (TREs) to analyse sensitive data. It provides a set of scripts that will allow you to deploy, administer and use your own TRE on Microsoft Azure cloud.

Cloud
cloud storage
Infrastructure as code
+ 3

Python
Shell
Jinja
+ 3

TIMP

TIMP is an R package for fitting superposition models that implements the partitioned variable projection algorithm. The package has been extensively applied to modeling spectroscopy and Fluorescence Lifetime Imaging Microscopy (FLIM) datasets. It serves as the backend for the Glotaran software.

global analysis
target analysis
time-resolved spectroscopy

sv-channels

Genome-wide detection of structural variants using deep learning

Machine learning

Python
Jupyter Notebook
R
+ 1

Emma

Emma is a project to create a platform for development of application for Spark and DockerSwarm clusters.

Big data

Shell
Scala
Python
+ 1

iReceptor Gateway

A Distributed Data Management System and Scientific Gateway for Mining Next Generation Sequence Data from Immune Responses.

immunogenomics
Immunology
iReceptor

PHP
Blade
Shell
+ 7

eEcology Tracker calendar

Calendar overview with daily statistics of GPS-trackers used to track bird movements.

Visualization

Python
Makefile
JavaScript
+ 5

BenchmarkRecovery

This project simulates Landsat data and evaluates the performance of recovery indicators with respect to data and disturbance characteristics.

Motus Wildlife Tracking System

The Motus Wildlife Tracking System (Motus) is an international collaborative research network that uses coordinated automated radio telemetry to facilitate research and education on the ecology and conservation of migratory animals.

conservation science
movement ecology
wildlife tracking

mzRecal

mzRecal recalibrates mass spectrometry (MS1) data in mzML format, using peptide identifications in mzIdentML.

mass spectrometry
proteomics

Go
Shell
R
+ 2

OpenMS

OpenMS is an open-source software C++ library for LC-MS data management and analyses. It offers an infrastructure for rapid development of mass spectrometry related software. OpenMS is free software available under the three clause BSD license and runs under Windows, macOS, and Linux.

C++
mass spectrometry
metabolomics
+ 1

C++
MAXScript
Cython
+ 14

OpenPNM

OpenPNM is an open source project aiming to provide porous media researchers with a ready-made framework for performing a wide range of pore network simulations.

Pore network modeling

C++
MAXScript
Cython
+ 14