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mzRecal

mzRecal recalibrates mass spectrometry (MS1) data in mzML format, using peptide identifications in mzIdentML.

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Description

mzRecal recalibrates mass spectrometry (MS1) data in mzML format, using peptide identifications in mzIdentML.

  • mzRecal uses calibration functions based on the physics of the mass analyzer (FTICR, Orbitrap, TOF)
  • Consuming and producing data in open standard formats (mzML, mzIdentML)
  • Simple to plug into a data processing pipeline
  • Recalibrated data generally results in a higher number of high-confidence identifications

picture of recalibration result

Keywords
mass spectrometry
proteomics
Programming languages
  • Go 82%
  • Shell 7%
  • R 6%
  • Makefile 4%
License
</>Source code

Participating organisations

Leiden University Medical Center
ELIXIR

Mentions

Contributors

Magnus Palmblad
Magnus Palmblad
Leiden University Medical Center
Rob Marissen
Rob Marissen
Leiden University Medical Center