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sv-gen

Highly portable parallel workflow to generate artificial genomes with structural variants.

Big data
High performance computing
Workflow technologies

Python
Shell

Tissue Simulation Toolkit

Tissue Simulation Toolkit (TST) 2.0 is an efficient C++ library for two-dimensional simulations of Glazier and Graner's Cellular Potts model (Glazier and Graner, 1993). It is suitable for simulations with live visualization as well as batch simulations on clusters.

Cellular Potts Model
Chemotaxis
Embryology
+ 1

C++
Python
Cuda
+ 5

Trustchain

Trustchain is a decentralized approach to public key infrastructure designed for application to digital identity. Based on the W3C standards for decentralized identifiers (DID) and verifiable credentials (VC), it enables the creation of chains of trustworthy DIDs between recognizable legal entities.

Decentralized public key infrastructure
Digital identity
Verifiable credentials

Rust
CSS
HTML
+ 1

TulipaEnergyModel

This package provides an optimization model for the electricity market and its coupling with other energy sectors. The objective is to determine the optimal investment and operation decisions for different types of assets.

optimization

Julia
Shell

UFEMISM2.0

The successor of UFEMISM, has all of its features (and more?), but is based on the distributed architecture introduced in minimism.

Finite volume method
ice sheet
MPI
+ 1

Fortran
MATLAB
Makefile
+ 2

UNSAT3D

Soil health is essential for infrastructure and plant growth. The UNSAT project aims to improve 3D soil image processing using machine learning and high-fidelity simulation data to study water transport and root-soil interactions during maize growth.

Data Analysis
Machine learning

Python
Shell

Xenon Docker images

For your testing needs a collection of Docker images with different file systems and batch schedulers.

High performance computing
Workflow technologies

Shell
Dockerfile
Roff
+ 4

yatiml

Python library for YAML type inference, schema checking and syntactic sugar.

Python
Shell

Yoda

A system for reliable, long-term storing and archiving large amounts of research data during all stages of a study.

HTML
Jinja
Python
+ 4

Zeeschuimer

Zeeschuimer is a browser extension that monitors traffic while browsing social media, and collects seen posts/items for later systematic analysis. Its target audience is researchers who study content on social media platforms that resist conventional scraping or API-based data collection.

Browser Extension
Instagram
Social media
+ 3

JavaScript
HTML
Python
+ 2