aiproteomics

This package contains various tools, datasets and ML model implementations from the field of (phospho-)proteomics. It is intended to facilitate the testing and comparison of different neural network architectures and existing models, using the same datasets. Both retention time and fragmentation (MSMS) models are included.

Implementations of existing models from the literature are intended to be modifiable/extendable. For example, so that tests may be carried out with different peptide input lengths etc.