All software
VeriABI
Software supporting the MSc thesis "Binary Interface Compatibility for Library Integration in C++": VeriABI, a machine-checked ABI compatibility checker
- ABI
- API
- Application Binary Interface
- + 6
- C
- C++
- Markdown
- + 2
Yeast mRNA tracking: NE segmentation, MLE fitting and particle tracking code and data
Yeast mRNA tracking: NE segmentation, MLE fitting and particle tracking code and data
- MLE
- mRNA tracking
- nuclear envelope
- + 3
- Markdown
- Other
- Python
- + 2
Abinit
Abinit is a software package based on density functional theory for calculating the properties of solids.
- C
- C++
- CMake
- + 15
Aiida-CHAMP
The aiida-champ plugin to handle the CHAMP workflow using AiiDA.
- python
- workflow
- Python
- Shell
aiproteomics
Generate and compare deep learning models for generating synthetic mass spectral libraries
- Machine learning
- mass spectrometry
- phosphoproteomics
- + 1
- Jupyter Notebook
- Python
- Shell
AGILE
AGILE is a GPU-accelerated fork of MPI-AMRVAC, a parallel adaptive mesh refinement framework aimed at solving (primarily hyperbolic) partial differential equations by a number of different numerical schemes. The emphasis is on (near) conservation laws and on shock-dominated problems in particular.
- Fortran
- GPU
- High performance computing
- Fortran
- FPP
- Jupyter Notebook
- + 4
Anatomy Matters
Reproducible analysis code for anatomical tumor–immune archetypes in diffuse large B-cell lymphoma.
- computational pathology
- diffuse large B-cell lymphoma
- jupyter notebooks
- + 4
- Jupyter Notebook
- PowerShell
- Python
- + 1
Arcmira: YouTube Transcript Search
Search indexed YouTube transcripts for timestamped quotes, speaker appearances, mentions and recommendations.
- Information Retrieval
- MCP
- transcript search
- + 1
- JavaScript
- Python
- Shell
- + 1
Arctic Web Map
Arctic Web Map (AWM) is an Arctic-specific web mapping tool allowing researchers to customize map projections for scientifically accurate visualization and analysis, a function that is critical for arctic research but missing in existing web mapping platforms.
- data collection
- python
- wildlife
- CSS
- JavaScript
- Python
- + 1
asrlitcompare
A tool written in rmarkdown for assessing the level of agreement between two raters following screening in ASReview. Users only need the two .csv files downloaded from ASReview, and the tool will automatically compile a summary report as an HTML file, viewable in your web browser.
- ASReview
- inter-rater reliability
- literature screening
- + 1
- AppleScript
- Awk
- Batchfile
- + 14
Axiom-0
Dependency-free Python reference implementation for explicit data contracts, canonicalization, measurable state transitions, KL-divergence checks, validation, and reproducible repository boundaries
- canonical json
- data contracts
- Reproducibility
- + 3
- CSS
- HTML
- JavaScript
- + 3
BGC Viewer
A viewer for biosynthetic gene cluster data.
- bioinformatics
- Gene Clusters
- natural products
- + 1
- CSS
- Dockerfile
- HTML
- + 6