All software
CoupledNODE
CoupledNODE.jl is a SciML repository that extends NODEs (Neural Ordinary Differential Equations) to C-NODEs (Coupled Neural ODEs), providing a data-driven approach to modelling solutions for multiscale systems when exact solutions are not feasible.
- Julia Language
- Julia Package
- Machine learning
- + 1
- Julia
- Shell
CRiSp
CRiSp (City River Spaces) provides tools to automate the morphological delineation of riverside urban areas.
- Data Analysis
- geospatial
- R
- + 1
- R
- TeX
CrowdED
CrowdED is a two-staged statistical guideline for optimal crowdsourcing experimental design in order to a-priori estimate optimal workers and tasks' assignment to obtain maximum accuracy on all tasks.
- Citizen Science
- Crowdsourcing
- Data Simulation
- Python
- R
- Dockerfile
cudawrappers
The cudawrappers library is a C++ wrapper for the Nvidia C libraries such as the CUDA driver, NVRTC, and cuFFT.
- accelerators
- CUDA
- GPU
- C++
- CMake
- Python
- + 2
cvasl
This library allows exploration and analyses of neuroimaging datsets. The software was developed to allow implementation of multiple large data harmonization and machine learning algorithms over neuroradiology datasets. The core algorithms are implemented in Python.
- Jupyter Notebook
- Python
- R
- + 3
cwltool
The reference implementation of the Common Workflow Language standards
- CommonWL
- CWL
- SciWorkflows
- Python
- Common Workflow Language
- Shell
- + 4
CWRC-Writer
An in-browser text markup editor for collaborative editing of scholarly projects.
- LOD
- named entity linking
- named entity Recognition
- + 3
- JavaScript
- CSS
- Less
- + 2
Data Processing (What Works When for Whom)
Data processing scripts for the project What Works When for Whom
- Jupyter Notebook
- Python
- Shell
DataStream
DataStream is a powerful online platform for sharing information about freshwater health. It is open access and built with communities, policy-makers and researchers in mind.
- Water quality
- watersheds
Democracy Datasets
Sentence-wise split datasets of country reports in CSV format
- CSV
- dataset
Democracy Scraping Tool
A scraping tool to scrape various sources of country reports.
- scraping
- Python
Democracy text classification
LLM transfer learning to classify country reports into democracy dimensions.
- fine-tuning
- llm
- transfer learning
- Jupyter Notebook
- Python
Democracy Topic Modelling
Various Jupyter notebooks for topic modelling on democracy texts including BERT and dictionary, keyword-based approaches.
- BERT
- dictionary
- Topic Modelling
- Jupyter Notebook
- Python
DG_RoomAcoustics
DG_RoomAcoustics is an open-source python-based software for room acoustics using the time-domain wave-based method. It implements the nodal discontinuous Galerkin method for spatial discretization of the linear acoustic equations, integrated over time with explicit schemes.
- Acoustics
- High performance computing
- python
- Python
Discuit
Python package with the goal to split datasets (e.g. words defined by several variables) into subsets that are as comparable as possible.
- Data
- linguistics
- python
- + 1
- Python
- Shell
Distance explainer
Explainable AI tool for explaining models that create embeddings.
- Embedded spaces
- XAI
- Python
- Jupyter Notebook
- Shell
doc2sentences
A python library to split sentence-wise and convert various document formats to CSV format.
- CSV
- python
- + 1
- Rich Text Format
- Python
- Shell
Drug named entity recognition
A lightweight Python library for finding drug names in a string, otherwise known as named entity recognition (NER) and named entity linking. This library finds only high confidence drugs and doesn't support misspellings at present.
- Data Science
- Medical text
- Natural Language Processing
- + 1
- Jupyter Notebook
- Python
DTBase
DTBase is a starter kit for making your own digital twin. Forking it will get you started with a database, a backend API, infrastructure for data ingress and running models, a basic web frontend, etc. You can then start building the more bespoke features of your digital twin on this foundation.
- Digital Twins
- Python
- HTML
- TypeScript
- + 3
DumME
Scikit-learn compatible version of Mixed-Effects Random Forests
- Python
e2e-Dutch
Coreference resolution for Dutch: automatically links references to the same entity in Dutch written texts.
- Machine learning
- Text analysis & natural language processing
- Python
- C++
- Shell
eEcology-SMS-reciever
If you have birds flying around carrying UvA-BiTS trackers, then this software can save the SMS messages containing the bird's last known positions which are sent by the tracker to the UvA Bird tracking system's central database.
- Real time data analysis
- Python
- Perl
- Mako
- + 1
EEG_age_prediction
Deep learning for age prediction using EEG data
- deep learning
- EEG Signal
- Time Series
- Jupyter Notebook
- Python
- Shell
EEG epilepsy diagnosis
R package developed to extract features from multivariate time series from EEG data and feed them into a random forest classifier.
- Machine learning
- R
- Rebol
Eigencuda
Offload Eigen matrix-matrix multiplications to an Nvidia GPU
- GPU
- High performance computing
- C++
- CMake
eitprocessing
eitprocessing is an open source collaborative python library for the processing and analysis of electrical impedance tomography for clinical use.
- Electrical impedance tomography
- Image processing
- python
- Jupyter Notebook
- Python
- Dockerfile
era5cli
A command line interface to download ERA5 data from the Copernicus Climate Data Store
- Python
Atlas of climate projections
The atlas demonstrates outputs from the probabilistic projection methods developed or assessed in the European Climate Projection system EUCP Horizon2020 project.
- Visualization
- Jupyter Notebook
- Vue
- Python
- + 1
ewatercycle-hype
eWatercycle plugin for HYPE hydrological model
- Python
eWatercycle SURF Research Cloud
Codified instructions for deploying the eWaterCycle platform on the SURF Research Cloud.
- Jinja
- Python
- Shell
ewatercycle-lisflood
eWatercycle plugin for LISFLOOD hydrological model
- Python
ewatercycle-marrmot
eWatercycle plugin for MARRMoT hydrological model
- Python
ewatercycle-pcrglobwb
eWaterCycle plugin for PCRGlobWB hydrological model
- Python
ewatercycle-wflow
eWaterCycle plugin for wflow hydrological model
- Python
ewatercycle-wflowjl
Wflow.jl plugin for eWatercycle.
- Python
- Dockerfile
eWaterLeaf
If you have large amounts of Geospatial grid-based data you would like to explore quickly, eWaterLeaf could be the visualisation for you.
- Visualization
- JavaScript
- HTML
- CSS
Excel-to-fhir
A utility to assist in managing FHIR resources in spreadsheets.
- Data processing
- FHIR
- TypeScript
EXCITED Machine Learning Workflow
An open workflow for creating machine learning models for estimating the global biospheric CO2 exchange.
- CO2
- Data Analysis
- geospatial
- + 4
- Jupyter Notebook
- Python
Experiment Launcher
Generate and launch Jupyter notebooks for your users.
- Workflow technologies
- Python
- Makefile
Explainable embeddings
Experiments with regard to explanation of embedded spaces and multi modal models.
- DIANNA
- Embedded spaces
- Explainable AI
- Jupyter Notebook
- Python
- HTML
- + 1
FAIR Data Point Client
fairdatapoint-client is a simple and elegant library to interact with FAIR Data Point resources from Python, e.g. read and write catalogs, datasets and distributions in an FDP server.
- Python
- Makefile
FAIRSECO
FAIRSECO provides a way to quickly analyse a variety of data and metrics of your software, and it allows you to explore the impact of your software on the academic world. Metadata is gathered from many different sources, which is then analysed and compiled into a clear overview.
- Data Analysis
- FAIR
- Inter-operability & linked data
- + 2
- TypeScript
- EJS
- JavaScript
FHIR to CAPACITY
Retrieves and converts patient records from a FHIR endpoint and uploads it to a CAPACITY registry.
- FAIR
- Inter-operability & linked data
- Jupyter Notebook
- Python
fieldcompare
A Python package for regression testing simulation results. Compare field data supporting various structured formats such as CSV and VTK file formats, through Python API or the command-line interface.
- Data Analysis
- Numerical analysis
- python
- + 1
- Python
FLAME GPU
FLAME GPU is a GPU accelerated simulator for domain independent complex systems simulations. FLAME GPU provides a mapping between a simple description of an agent and its interactions into optimised GPU code. The software abstracts the details and complexity of the GPU away from modellers.
- GPU
- High performance computing
- Multi-scale & multi model simulations
- + 2
flamingo
Compute and filter molecular properties for quantum dot ligands
- High performance computing
- Python
fm128-radar
A python library to write ascii based fm128_radar files to be used in WRFDA
- Python
Forecasting the grid emission factor for the Netherlands
A workflow to produce emission factor forecasts for the electricity mix of the Netherlands, up to 7 days ahead.
- electricity grid
- emission factor
- Forecasting
- + 1
- Python
- Dockerfile