Software | Research Software Directory

Partile filter code with an example of weight collapse in importance sampling methods

Data assimilation
Importance sampling
Particle method
+ 2

(Markdown)
(Other)
(Python)

1

0

Permission-based Verification of Red-Black Trees and Their Merging - Code

Deductive verification
magic wand
producer-consumer pattern
+ 3

1

0

perm_map_circuits

Code underlying: Efficient Circuits for Permuting and Mapping Packed Values Across Leveled Homomorphic Ciphertexts

cryptography
graph coloring
homomorphic encryption
+ 1

(C)
(C++)
(Markdown)
+ 2

2

0

point-based-occluder

Code accompanying the paper: Performance verification of human field of view occluders for light measurement and simulation

corneal light exposure
FOV occlusion
goniophotometry
+ 2

(Markdown)
(Other)
(Python)

2

0

port_data_graphs

Code: Generating Graphs based on Real-World Port Data

Data
graph
port

(JSON)
("Jupyter Notebook")
(large-text-file)
+ 2

1

0

PPC_code

Code underlying the publication: Anomalous Change Point Detection Using Probabilistic Predictive Coding

Anomaly detection
change point detection
deep learning
+ 2

(Markdown)
(Other)
(Python)

6

0

Prediction of Trip Production

The codes associated with the publication: The Role of Spatial Features and Adjacency in Data-driven Short-term Prediction of Trip Production: An Exploratory Study in the Netherlands

demand prediction
graph convolution
residual analysis
+ 3

("Jupyter Notebook")
(large-text-file)
(Markdown)
+ 1

5

0

Predictive_Traffic_Signal_Control

Real-Time Predictive Traffic Signal Control Application for Prototyping

Model predictive control
prediction error
prediction uncertainty
+ 3

(C)
(C++)
(large-text-file)
+ 3

1

0

private-logic-and-mpso

Code underlying: Fast Multi-party Private Set Operations in the Star Topology from Secure ANDs and ORs

cryptography
privacy enhancing technologies
private logic
+ 2

(Markdown)
(Other)
(Rust)

1

0

Proactive Motion Planning Codes for Emergency Collision Avoidance in Highway Scenarios

automated driving
Collision Avoidance
Emergency Scenarios
+ 5

1

0

Probabilistic-adequacy-constrained-planning-of-offshore-MMC-HVDC-based-wind-power-systems

Source code underlying the publication: Probabilistic adequacy constrained planning of offshore MMC-HVDC-based wind power systems

MATLAB
open-data
Open-source
+ 1

(Markdown)
(Matlab)
(Other)

1

0

Programs to evaluate superoptimizer STOKE.

compiler
optimization
stochastic

1

0

Propagation model and PIE model, underlying the master thesis: Knowledge in Building with Nature pilot projects

Building with Nature
diffusion
Pilot projects
+ 4

1

0

PSI_dust_size_distribution

Code underlying the publication "Polydisperse Formation of Planetesimals: The dust size distribution in clumps"

hydrodynamics
instabilities
methods: numerical
+ 2

(Markdown)
(Other)
(Python)
+ 1

3

0

Purcell filter simulation scripts

cqed
cross-dephasing
dicarlo
+ 14

1

0

pyBarSim

BarSim
Process-response model
python
+ 2

("Jupyter Notebook")
(Markdown)
(Other)
+ 2

3

0

pydsol-model

pydsol-model: Python Distributed Simulation Object Library with Predefined Model Objects

Discrete event simulation (DES)
model objects
python
+ 1

(CSS)
(HTML)
(JavaScript)
+ 3

1

0

PyNOMAD: A microscopic pedestrian simulation model

Crowd dynamics
Microscopic pedestrian model
Pedestrian modelling

(C)
(Markdown)
(Other)
+ 1

4

0

pystreed

Source code and data for the paper "Necessary and Sufficient Conditions for Optimal Decision Trees using Dynamic Programming"

dynamic programming
group fairness
optimal decision trees
+ 1

(C)
(C++)
(large-text-file)
+ 3

3

0

Python code for Sand Scraper Analysis

aeolian sediment transport
beach
coastal dunes
+ 5

1

0

Python code for the analysis of AeoLiS grain size scenarios

aeolian processes
aeolis
beach
+ 4

1

0

Python code of Hydrodynamic Model underlying the master thesis: "The Delta Barrier - A climate robust preliminary design of the Delta21 storm surge barrier"

hydrodynamics
Numerical Model
storm surge barrier
+ 1

1

0

Python Models underlying the master thesis: Managing Water and Energy on Small Touristic Islands: study case Caye Chapel

Multi-criteria decision analysis
Multi-Objective Optimization
renewable energy
+ 2

1

0

Python Scripts used in the study: Towards Affordable 3D Physics-Based River Flow Rating: Application Over Luangwa River Basin

ground control points (GCP)
hydraulic models
open source software
+ 2

3

0

QMI - Quantum Measurement Infrastructure, a Python 3 framework for controlling laboratory equipment

control
hardware
laboratory
+ 2

(Markdown)
(Other)
(Python)
+ 2

16

0

quality_diversity_sparse_data

Code: Quality Diversity Algorithms for Calibrating a Supply Chain Simulation Model with Sparse Data

calibration
quality diversity
Simulation
+ 2

("Jupyter Notebook")
(Other)
(Python)
+ 1

1

0

Queueing Times of Automated Vehicles in a Bottleneck: MATLAB Code

Automated vehicles
Bottleneck model
On-board activities
+ 1

1

0

Raw data and scripts supporting measurements of topologically trivial states at the edges of Bi(110) on Ge(111)

Bismuth
Germanium
Scanning Tunneling Microscopy
+ 2

("Jupyter Notebook")
(Markdown)
(Other)

2

0

R code for WHO SEJ study 2026

burden of disease
source attribution
Structured Expert Judgment
+ 1

1

0

R code underlying the analysis reported in Predicting elbow load based on individualised (inter)segmental rotation in fastball pitching

baseball
elbow load
external valgus torque
+ 2

1

0

R code underlying the analysis reported in the manuscript "Machine learning approach for pitch type classification based on pelvis and trunk kinematics captured with wearable sensors"

baseball
Classification
kinematics
+ 3

1

0

rdm101-impact-study

Analysis Code Supporting "RDM 101 Impact Evaluation: A Study on Training Effectiveness and Research Practice Changes"

data stewardship
FAIR principles
feedback
+ 6

(Markdown)
(Other)
(R)

1

0

reference_set_selection_benchmark

Code underlying the publication: "Benchmarking the impact of reference genome selection on taxonomic profiling accuracy"

Genome Selection
Lineage Abundance Estimation
Sequence Clustering
+ 2

("Jupyter Notebook")
(Markdown)
(Other)
+ 3

3

0

Research compendium for FAIR Sharing is Caring poster

Data Sharing
FAIR data
open science
+ 1

(CSS)
(HTML)
(JavaScript)
+ 4

3

0

ReSeT

Code underlying the publication: "ReSeT: a taxonomy-aware reference genome selection tool"

Facility-Location Problem
Genome Selection
Local Search
+ 1

(Markdown)
(Other)
(Python)
+ 2

2

0

RobustQO, data and codes related to the paper: "Extending the scope of robust quadratic optimization."

Inner approximation
Mean-variance uncertainty
Outer approximation
+ 2

4

0

rockin-webapp

RockIn - A webapp for rock sample registration

borehole
borehole drilling
core
+ 10

(HTML)
(JavaScript)
(Markdown)
+ 4

2

0

ROOSTER: ROS package for robot fleet management

Multi-Robot Systems
Robot Fleet Management
robotics
+ 1

5

0

Salt_Marsh_Cliff_Erosion_Model

Accompanying Software for: "Spatial Variability and Drivers of Salt Marsh Cliff Erosion in the Dutch Wadden Sea: from Observation to Simulation"

cliff erosion
Coastal wetlands
Delft3D Flexible Mesh
+ 3

(Markdown)
(Other)
(Python)

8

0

SAM Java and Matlab code for running and analysis the experiments in the PhD Thesis: Self-Organizing Multi-Agent Systems

AI
DCOP

1

0

SARS-CoV-2 variant quantification using kallisto code

COVID-19
kallisto
SARS-CoV-2
+ 1

1

0

SCINTILLATION_COMSOL

Code underlying: Shape Optimization of Scintillation Crystals through COMSOL

COMSOL
FEM
optimization
+ 1

(HTML)
(Markdown)
(Matlab)
+ 2

1

0

Script companion to: A note on the modelling of lubrication forces in unresolved simulations

CFD-DEM
Fluid-solid systems
Lubrication force
+ 2

3

0

Script for Semi-automated Sensitivity Analysis for Structural Equation models (mediation analysis) in R

greenness
green space
health
+ 3

1

0

Scripts for AWE Control Design and Simulation

airborne wind energy
Controls
Simulation

1

0

Scripts for the Master Thesis Life Cycle Fatigue Damage Estimation for Military Off-Road Vehicles

fatigue damage
off-road military vehicle

1

0

Script that produces the table and figures for: Pitfalls of Statistical Methods in Traffic Psychology

Bias
common method variance
correlation coefficient
+ 12

1

0