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Video Annotation Software

Artificial intelligence
process modeling study
Process modelling

VSIDS learning code: "Learning Variable Activity Initialisation for Lazy Clause Generation Solvers"

GCN
Graph Convolutional Networks
lazy clause generation
+ 5

Wake-informed Lifting Line Theory: Example Code

Blade Loading Distributions
Experimental Measurement Analysis
Lifting Line
+ 3

xcrisp

Data and code underlying the publication: X-CRISP: Domain-Adaptable and Interpretable CRISPR Repair Outcome Prediction

CRISPR
DNA repair
explainability
+ 3

Abinit

Abinit is a software package based on density functional theory for calculating the properties of solids.

Fortran
Python
M4
+ 15

addFeatures

addFeatures adds spot images to a SCiLS Lab dataset from a list of defined mass spectral features.

Image processing
mass spectrometry

admtools

Estimate age-depth models in geology and use them to transform various types of data (fossil ages, phylogenetic trees, trait evolution of lineages) between the time domain and the stratigraphic domain.

Age-depth modeling
Geochronology
Sedimentology
+ 1

Aiida-CHAMP

The aiida-champ plugin to handle the CHAMP workflow using AiiDA.

python
workflow

Python
Shell

aiproteomics

Generate and compare deep learning models for generating synthetic mass spectral libraries

Machine learning
mass spectrometry
phosphoproteomics
+ 1

Jupyter Notebook
Python
Shell

Allelic Variation Explorer

If you are studying how single nucleotide polymorphisms are clustered in genomic samples, then the Allelic Variation Explorer can help you visualize them.

Visualization

Python
Dockerfile
AngelScript

MPI-AMRVAC

MPI-AMRVAC is a parallel adaptive mesh refinement framework aimed at solving (primarily hyperbolic) partial differential equations by a number of different numerical schemes. The emphasis is on (near) conservation laws and on shock-dominated problems in particular.

Fortran
Python
Shell
+ 2

ANNUBeS

ANNUBeS is a deep learning framework meant to generate synthetic data and train on them neural networks aimed at developing and evaluating animals' training protocols in neuroscience.

neural networks
Neuroscience

Python

Annular

Annular is a setup for running coupled energy system models with the aim of modeling flexibility scheduling and the policy regulations that affect the behavior of flexibility providers.

Jupyter Notebook
Python

ArcticConnect

ArcticConnect is a network-enabled platform for realizing geospatial referencing of information about the arctic system derived from research, education, and private sector activities in the arctic and subarctic.

Arctic
Polar

HTML

Arctic Web Map

Arctic Web Map (AWM) is an Arctic-specific web mapping tool allowing researchers to customize map projections for scientifically accurate visualization and analysis, a function that is critical for arctic research but missing in existing web mapping platforms.

data collection
python
wildlife

Python
JavaScript
CSS
+ 1

ARISE biocloud

The Biocloud is the underlying digital back-end infrastructure of the ARISE program.

Arpra

Arpra is a C library for analyzing the propagation of numerical error in arbitrary precision IEEE-754 floating-point computations.

Affine Arithmetic
Arbitrary Precision
Interval Arithmetic
+ 2

C
Makefile
M4

asreview-simulation

Command line interface to simulate an ASReview analysis using a variety of prior sampling strategies, classifiers, feature extractors, queriers, balancers, and stopping rules, all of which can be configured to run with custom parameterizations.

AI
ASReview
Automated Systematic Review
+ 4

Python

asrlitcompare

A tool written in rmarkdown for assessing the level of agreement between two raters following screening in ASReview. Users only need the two .csv files downloaded from ASReview, and the tool will automatically compile a summary report as an HTML file, viewable in your web browser.

ASReview
inter-rater reliability
literature screening
+ 1

HTML
C++
JavaScript
+ 14

AstroImages.jl

Visualization of astronomical images in Julia

astronomy
Astrophysics
Julia Package
+ 1

Julia

AstroLib.jl

Bundle of small astronomical and astrophysical routines.

astronomy
Astrophysics
Julia Package

Julia

Atlascine

Atlascine is an open-source, online mapping platform dedicated to bringing stories and maps closer together. This tool combines multimedia storytelling with digital mapping technologies to enable researchers to create, interact with and study spatial relationships within and between stories.

atlas
geovisualization
Mapping stories
+ 3

JavaScript
CSS
HTML

AttentionLayer.jl

Implements the Attention mechanism in Julia as a modular Lux layer

Julia Package
Machine learning
Scientific machine learning

Julia

haddock3-webapp

Web app to build haddock3 configuration and run it.

TypeScript
CSS
JavaScript
+ 2

i-VRESSE bartender

Bartender is a middleware web service to schedule jobs on various infrastructures.

Workflow technologies

Python
Dockerfile
Mako

BestieTemplate.jl

BestieTemplate.jl is a template focused on best practices for package development in Julia.

best practices
julia
template

Julia

BGC Viewer

A viewer for biosynthetic gene cluster data.

Python
Vue
TypeScript
+ 5

BIOMERO

a scalable and extensible image analysis framework

biaflows
bioimaging
biomero
+ 9

Python
Shell
Dockerfile

bird-cloud-gnn

bird-cloud-gnn is a Python package that helps generate a graph representation from point cloud data and fits graph neural networks for classification problem

Classification
Graph Neural Network
Machine learning
+ 2

Python

boatswain

Boatswain is a simple build system for docker images. It is especially useful when you have multiple docker images that depend on each other.

containers
docker

Python
Dockerfile

Brei

a minimalist workflow system in Python

python
Workflow technologies

Python

BridgeDbR

R package for the BridgeDb Java library making identifier mapping functionality available in the R environment.

persistent identifiers
Statistics

R
TeX
HTML

BridgeDb Webservice

REST API for identifier mapping

persistent identifiers
REST API
webservice

Java
HTML
JavaScript
+ 1

BroadLineRegions.jl

A fast and flexible toolkit for modeling the broad-line region (BLR) in Julia.

astronomy
Astrophysics

Julia
TeX

c3s-magic-wps

Web Processing Service for Climate Data Analysis in the MAGIC project.

Python
Makefile
Shell
+ 1

Canadian Advanced Network for Astronomical Research (CANFAR)

The Canadian Advanced Network for Astronomy Research (CANFAR) is a consortium that serves data-intensive storage, access, and processing needs of university groups and centers engaged in astronomy research.

authenticated
CANFAR
condor
+ 6

Canadian Writing Research Collaboratory (CWRC)

CWRC aims to make digital research methods broadly accessible, and to develop an active community of researchers engaged in exploring the potential of collaboration online.

Canadian culture & history
cultural studies
digital humanities
+ 1

JavaScript
PHP
HTML
+ 16

CanDIG CHORD

CHORD is a project to build a federated, Canadian, national data service for privacy- sensitive genomic and related health data. It allows the technologies and services being built by CanDIG and its international partners to be made available to the Canadian health research community more broadly.

CanDIG
GA4GH
genomics

Python
Lua
Shell

CanGeo Project

The goal of this project is to provide a web service providing inland waterbodies initially available on GeoBase and updated using the most recent Landsat-8 imagery.

canada
GeoRSS
imagery
+ 7

CanWIN

CanWIN (Canadian Watershed Information Network) is the data centre for the Centre for Earth Observation Science (CEOS). We support research and education, and inform management, policy and evidence based decision-making from the Nelson River Watershed to the Arctic.

Arctic
geospatial
metadata
+ 4

Carbon Budget Explorer (CABE)

Web application to visualize countries' carbon emission pathways under various views on fairness.

Svelte
TypeScript
Python
+ 3

caselawnet

Caselawnet constructs citation networks from collections of Dutch case law.

Big data

Jupyter Notebook
Python
HTML
+ 1

CAT

CAT is a collection of tools designed for the construction of various chemical compounds.

High performance computing

Python
Shell

ccglib

The Complex Common GEMM Library (ccglib) provides mixed-precision matrix-matrix multiplication kernels for complex data.

CUDA
GPU
High performance computing
+ 1

C++
Cuda
CMake
+ 2

CDF2Medmij-Mapping-tool

The CDF2Medmij-Mapping-tool facilitates the seamless transformation of cohort data into MedMij-compliant FHIR formats, enabling the harmonization of diverse datasets within a federated learning infrastructure.

TypeScript
JavaScript
HTML
+ 2

Ceiba

Ceiba and its command-line interface Ceiba-cli solve the problem of computing, storing, and securely sharing computationally expensive simulation results.

Optimized data handling

Python
TeX
Shell
+ 1

ceiba-cli

command line interface to interact to interact with the ceiba web server

Optimized data handling

Python

Cerise

Cerise is a service for running CWL workflows on HPC resources. You add software, tool descriptions, and connection information, then your user runs workflows whenever they want.

High performance computing
Optimized data handling
Workflow technologies

Python
Common Workflow Language
Dockerfile
+ 2