Software | Research Software Directory

MUSICiAn

Data and code underlying the publication: MUSICiAn: Genome-wide Identification of Genes Involved in DNA Repair via Control-Free Mutational Spectra Analysis

compositional data analysis
control-free
CRISPR
+ 6

5

0

NetLogo Agent-Based Model on energy poverty in the switch to a heat network in Delft

Agent-based models
energy justice
energy poverty
+ 3

1

0

NetLogo model: "Agent-Based Simulation of West Asian Urban Dynamics: Impact of Refugees"

agent-based modelling
housing
Lebanon
+ 4

3

0

News is More than a Collection of Facts: Moral Frame Preserving News Summarization - code

Framing
Large Language Models (LLMs)
Morality
+ 1

Jupyter Notebook
Python
Other
+ 2

3

0

np_heating

Code for the modeling of heating around plasmonic core–shell nanoparticles

Heat transfer
Photothermal effect
Plasmonic nanoparticles
+ 1

Python
Markdown
Other

2

0

NSG2023-EMinversion

Data and scripts underlying the publication: Global search inversion for electromagnetic induction data using layered models

electromagnetic induction
frequency domain electromagnetics
geophysics

Python
Jupyter Notebook
Other
+ 1

3

0

Numerical model configurations for "A synthetic spring-neap tidal cycle for long-term morphological modelling"

Delft3D-FM
geomorphology;
modelling estimates

4

0

NumPy-based Salt Flux Decomposition

estuaries
Hydrodynamic model
salinity
+ 1

Python
Other
Markdown
+ 1

1

0

optimal-stretching

Source code underlying the publication: Optimal Graph Stretching for Distributed Averaging

Consensus protocols
Convergence time
Cycle elimination
+ 13

Matlab
Markdown
Other

1

0

optimization_code - Further supporting material for "A hardware-efficient leakage-reduction scheme for quantum error correction with superconducting transmon qubits"

leakage reduction units
quantum error correction
superconducting qubits

3

0

oraqle

Oraqle: A Depth-Aware Secure Computation Compiler

arithmetization
compiler
cryptography
+ 1

Python
Other
Markdown
+ 4

1

0

PARAMOUNT: parallel modal analysis of large datasets

Parallel Processing
proper orthogonal decomposition (POD)
singular value decomposition (SVD)
+ 2

2

0

Particle filter code with an example of subsidence caused by a compacting reservoir

Data assimilation
Particle filter
Reservoir compaction
+ 1

Other
Python
Markdown

1

0

Partile filter code with an example of weight collapse in importance sampling methods

Data assimilation
Importance sampling
Particle method
+ 2

Python
Other
Markdown

1

0

patient-interaction-detection

Python code to detect interaction of medical personnel with the operating table from surveillance videos

2D human poses
Action recognition
Operating table interaction
+ 3

Python
Other
JSON
+ 2

1

0

Permission-based Verification of Red-Black Trees and Their Merging - Code

Deductive verification
magic wand
producer-consumer pattern
+ 3

1

0

perm_map_circuits

Code underlying: Efficient Circuits for Permuting and Mapping Packed Values Across Leveled Homomorphic Ciphertexts

cryptography
graph coloring
homomorphic encryption
+ 1

C++
C
Markdown
+ 2

2

0

PETsChallenge

Code underlying: Privacy-Preserving Membership Queries for Federated Anomaly Detection

Anomaly detection
cryptography
elliptic curves
+ 4

Rust
Markdown
Python
+ 4

8

0

port_data_graphs

Code: Generating Graphs based on Real-World Port Data

Data
graph
port

Jupyter Notebook
JSON
Python
+ 2

1

0

Prediction of Trip Production

The codes associated with the publication: The Role of Spatial Features and Adjacency in Data-driven Short-term Prediction of Trip Production: An Exploratory Study in the Netherlands

demand prediction
graph convolution
residual analysis
+ 3

Jupyter Notebook
Other
Markdown
+ 1

5

0

Predictive_Traffic_Signal_Control

Real-Time Predictive Traffic Signal Control Application for Prototyping

Model predictive control
prediction error
prediction uncertainty
+ 3

Other
C++
C
+ 3

1

0

private-logic-and-mpso

Code underlying: Fast Multi-party Private Set Operations in the Star Topology from Secure ANDs and ORs

cryptography
privacy enhancing technologies
private logic
+ 2

Rust
Other
Markdown

1

0

Proactive Motion Planning Codes for Emergency Collision Avoidance in Highway Scenarios

automated driving
Collision Avoidance
Emergency Scenarios
+ 5

1

0

ProbabilisticValidation

Source code underlying the publication: Privacy-Preserving Data Aggregation with Probabilistic Range Validation

privacy-preserving summation
range validation
secure multi-party computation
+ 1

Matlab
Markdown

2

0

Programs to evaluate superoptimizer STOKE.

compiler
optimization
stochastic

1

0

Propagation model and PIE model, underlying the master thesis: Knowledge in Building with Nature pilot projects

Building with Nature
diffusion
Pilot projects
+ 4

1

0

PSI_dust_size_distribution

Code underlying the publication "Polydisperse Formation of Planetesimals: The dust size distribution in clumps"

hydrodynamics
instabilities
methods: numerical
+ 2

Python
Other
Markdown
+ 1

3

0

Purcell filter simulation scripts

cqed
cross-dephasing
dicarlo
+ 14

1

0

pyBarSim

BarSim
Process-response model
python
+ 2

Python
Jupyter Notebook
Other
+ 2

3

0

pydsol-model

pydsol-model: Python Distributed Simulation Object Library with Predefined Model Objects

Discrete event simulation (DES)
model objects
python
+ 1

Other
HTML
Python
+ 3

1

0

PyNOMAD: A microscopic pedestrian simulation model

Crowd dynamics
Microscopic pedestrian model
Pedestrian modelling

Python
Other
Markdown
+ 1

4

0

pystreed

Source code and data for the paper "Necessary and Sufficient Conditions for Optimal Decision Trees using Dynamic Programming"

dynamic programming
group fairness
optimal decision trees
+ 1

Other
C++
C
+ 3

3

0

Python code for Sand Scraper Analysis

aeolian sediment transport
beach
coastal dunes
+ 5

1

0

Python code for the analysis of AeoLiS grain size scenarios

aeolian processes
aeolis
beach
+ 4

1

0

Python code of Hydrodynamic Model underlying the master thesis: "The Delta Barrier - A climate robust preliminary design of the Delta21 storm surge barrier"

hydrodynamics
Numerical Model
storm surge barrier
+ 1

1

0

Python Models underlying the master thesis: Managing Water and Energy on Small Touristic Islands: study case Caye Chapel

Multi-criteria decision analysis
Multi-Objective Optimization
renewable energy
+ 2

1

0

Python Scripts used in the study: Towards Affordable 3D Physics-Based River Flow Rating: Application Over Luangwa River Basin

ground control points (GCP)
hydraulic models
open source software
+ 2

3

0

QMI - Quantum Measurement Infrastructure, a Python 3 framework for controlling laboratory equipment

control
hardware
laboratory
+ 2

Python
Other
Markdown
+ 2

16

0

quality_diversity_sparse_data

Code: Quality Diversity Algorithms for Calibrating a Supply Chain Simulation Model with Sparse Data

calibration
quality diversity
Simulation
+ 2

Python
Jupyter Notebook
Other
+ 1

1

0

Queueing Times of Automated Vehicles in a Bottleneck: MATLAB Code

Automated vehicles
Bottleneck model
On-board activities
+ 1

1

0

R code underlying the analysis reported in Predicting elbow load based on individualised (inter)segmental rotation in fastball pitching

baseball
elbow load
external valgus torque
+ 2

1

0

R code underlying the analysis reported in the manuscript "Machine learning approach for pitch type classification based on pelvis and trunk kinematics captured with wearable sensors"

baseball
Classification
kinematics
+ 3

1

0

Research compendium for FAIR Sharing is Caring poster

Data Sharing
FAIR data
open science
+ 1

Other
HTML
CSS
+ 4

3

0

RobustQO, data and codes related to the paper: "Extending the scope of robust quadratic optimization."

Inner approximation
Mean-variance uncertainty
Outer approximation
+ 2

4

0

rockin-webapp

RockIn - A webapp for rock sample registration

borehole
borehole drilling
core
+ 10

Python
Markdown
YAML
+ 4

2

0

ROOSTER: ROS package for robot fleet management

Multi-Robot Systems
Robot Fleet Management
robotics
+ 1

5

0

SAM Java and Matlab code for running and analysis the experiments in the PhD Thesis: Self-Organizing Multi-Agent Systems

AI
DCOP

1

0

SARS-CoV-2 variant quantification using kallisto code

COVID-19
kallisto
SARS-CoV-2
+ 1

1

0

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