BridgeDb Java

Java library for identifier mapping

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What BridgeDb Java can do for you

BridgeDb Java is a library that maps identifiers from one source to another. For example, it can map NCBI Gene identifiers to Ensembl gene identifiers, and DOIs to PubMed identifiers.

For example, the following code shows how identifiers for the ChEBI data source
can be used:

DataSource chebi = DataSource.getExistingByFullName("ChEBI");
assertNotNull(chebi);
assertEquals("urn:miriam:chebi:1234", chebi.getMiriamURN("1234"));
assertEquals("chebi", chebi.getCompactIdentifierPrefix());
Logo of BridgeDb Java
Keywords
Programming languages
  • Java 91%
  • Perl 7%
  • CSS 1%
  • Shell 1%
License
  • Apache-2.0
</>Source code

Participating organisations

Maastricht University
ELIXIR
University of Manchester
Heriot-Watt University
Gladstone Institutes

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