BridgeDb Java

doi:10.5281/zenodo.593034

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BridgeDb Java

Java library for identifier mapping

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Cite this software

DOI:

10.5281/zenodo.593034

Description

BridgeDb Java is a library that maps identifiers from one source to another. For example, it can map NCBI Gene identifiers to Ensembl gene identifiers, and DOIs to PubMed identifiers.

For example, the following code shows how identifiers for the ChEBI data source
can be used:

DataSource chebi = DataSource.getExistingByFullName("ChEBI");
assertNotNull(chebi);
assertEquals("urn:miriam:chebi:1234", chebi.getMiriamURN("1234"));
assertEquals("chebi", chebi.getCompactIdentifierPrefix());