BridgeDbR
BR
R package for the BridgeDb Java library making identifier mapping functionality available in the R environment.
Updated 2 weeks ago
Java library for identifier mapping
BridgeDb Java is a library that maps identifiers from one source to another. For example, it can map NCBI Gene identifiers to Ensembl gene identifiers, and DOIs to PubMed identifiers.
For example, the following code shows how identifiers for the ChEBI data source
can be used:
DataSource chebi = DataSource.getExistingByFullName("ChEBI");
assertNotNull(chebi);
assertEquals("urn:miriam:chebi:1234", chebi.getMiriamURN("1234"));
assertEquals("chebi", chebi.getCompactIdentifierPrefix());
R package for the BridgeDb Java library making identifier mapping functionality available in the R environment.