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BridgeDb Java

Java library for identifier mapping

226
mentions
18
contributors

Cite this software

DOI:

10.5281/zenodo.593034

Description

BridgeDb Java is a library that maps identifiers from one source to another. For example, it can map NCBI Gene identifiers to Ensembl gene identifiers, and DOIs to PubMed identifiers.

For example, the following code shows how identifiers for the ChEBI data source
can be used:

DataSource chebi = DataSource.getExistingByFullName("ChEBI");
assertNotNull(chebi);
assertEquals("urn:miriam:chebi:1234", chebi.getMiriamURN("1234"));
assertEquals("chebi", chebi.getCompactIdentifierPrefix());
Logo of BridgeDb Java
Keywords
Data
persistent identifiers
Programming languages
License
</>Source code
Packages

Participating organisations

Maastricht University
ELIXIR
University of Manchester
Heriot-Watt University
Gladstone Institutes

Reference papers

Mentions

Contributors

Contact person

EW
MPvI
IH
Isaac Ho
HB
Helena Basaric
Maastricht University

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BridgeDb and Wikidata

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BridgeDbR

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R package for the BridgeDb Java library making identifier mapping functionality available in the R environment.

Updated 31 months ago