All software
MatRad
Matrad is an open source software for radiation treatment planning of intensity-modulated photon, proton, and carbon ion therapy.
- Treatment Planning and dosimetry
- C++
- MATLAB
- TeX
μ-awk
This is a tiny Python implementation of a line processor with Awk-like semantics. You write a set of regex-based rules. The program loops through the lines of some input file, running the matching functions on lines that match.
- python
- Text analysis & natural language processing
- Python
MCsquare
Fast Monte Carlo dose calculation algorithm for the simulation of PBS proton therapy.
- Treatment Planning and dosimetry
- Batchfile
- C
- Makefile
- + 1
Medical Image Processing in Python
This lesson introduces some specifics of medical image processing with popular Python libraries such as SimpleITK, Pydicom and NiBabel. Reconstruction algorithms, image and DICOM anonymization, registration, segmentation, data augmentation and generative AI are covered.
- Image processing
- medical
- radiology
med-imagetools
Aims to provide transparent and reproducible medical image processing pipelines in Python. Focuses on subject-based machine learning and processing DICOMs into deep learning-ready format.
- Imaging and Image Processing
- Dockerfile
- Jupyter Notebook
- Python
Metasyn
Metasyn is a Python tool for synthetic data generation. It is geared towards use-cases where privacy is of the utmost importance. Metasyn emphasizes transparency and auditability of the outputs.
- disclosure
- generative models
- metadata
- + 3
- Dockerfile
- Python
Metriplane
Open-source Python software for workcell state observation, incident evidence, deterministic record/replay, and reproducible regression testing.
- ArUco
- benchmark evidence
- computer vision
- + 12
- CSS
- Dockerfile
- HTML
- + 3
mibibio
Collection of microbial analysis workflows to investigate microbiological community structure, characteristics and their degradation potential.
mibiremo
MiBiReMo (Microbiome Bioremediation Reaction Module) is a Python interface to the PhreeqcRM library. The package is designed to be coupled with transport models to simulate reactive transport in porous media, with applications in environmental and geochemical engineering.
- Makefile
- Python
mibiscreen
Data handling and screening package of the Microbiome based remediation Prediction Tool
- Data Analysis
- Multi-scale & multi model simulations
- python
- Jupyter Notebook
- Python
- Shell
mibitrans
A collection of analytical and semi-semianalytical solutions for hydrogeological transport phenomena
- Multi-scale & multi model simulations
- python
- Python
- Shell
Mimetic Operators Library Enhanced (MOLE)
MOLE is a high-quality (C++ & MATLAB/Octave) library of high-order mimetic operators to solve partial differential equations. It provides discrete analogs of vector calculus operators: Gradient, Divergence, Laplacian, Bilaplacian, and Curl. These operators satisfy local and global conservation laws.
- Mathematical Software
- Mimetic Operators
- Partial differential equations
- C
- C++
- CMake
- + 4