All software
Agent Foundations
Bilingual theory, evidence, and architecture-decision foundation for agent systems, with canonical sources, explicit claim states, implementation boundaries, validation states, and reproducibility discipline
- agent systems
- architecture decisions
- evidence
- + 3
- HTML
- Python
Agentic Frontier Observatory
Bilingual, source-grounded observatory tracing global AI from its intellectual and computational roots to the agentic frontier across models, protocols, runtimes, evaluation, safety, governance, and ecosystems
- agentic systems
- Artificial Intelligence
- evidence
- + 3
Aiida-CHAMP
The aiida-champ plugin to handle the CHAMP workflow using AiiDA.
- python
- workflow
- Python
- Shell
aiproteomics
Generate and compare deep learning models for generating synthetic mass spectral libraries
- Machine learning
- mass spectrometry
- phosphoproteomics
- + 1
- Jupyter Notebook
- Python
- Shell
Allelic Variation Explorer
If you are studying how single nucleotide polymorphisms are clustered in genomic samples, then the Allelic Variation Explorer can help you visualize them.
- Visualization
- AngelScript
- Dockerfile
- Python
Amazing GitHub Research Repo
This is a showcase of all the amazing features that GitHub offers for your research project
- Data Science
- GitHub Actions
- pandas
- + 3
- Python
AMIGOpy
Welcome to AMIGOpy (A Medical Image-based Graphical platfOrm - Python)! This is an evolution of the previously developed MATLAB-based software AMIGOBrachy.
- Treatment Planning and dosimetry
- C++
- CSS
- Inno Setup
- + 2
AGILE
AGILE is a GPU-accelerated fork of MPI-AMRVAC, a parallel adaptive mesh refinement framework aimed at solving (primarily hyperbolic) partial differential equations by a number of different numerical schemes. The emphasis is on (near) conservation laws and on shock-dominated problems in particular.
- Fortran
- GPU
- High performance computing
- Fortran
- FPP
- Jupyter Notebook
- + 4
Anatomy Matters
Reproducible analysis code for anatomical tumor–immune archetypes in diffuse large B-cell lymphoma.
- computational pathology
- diffuse large B-cell lymphoma
- jupyter notebooks
- + 4
- Jupyter Notebook
- PowerShell
- Python
- + 1
ANNUBeS
ANNUBeS is a deep learning framework meant to generate synthetic data and train on them neural networks aimed at developing and evaluating animals' training protocols in neuroscience.
- neural networks
- Neuroscience
- Python
Annular
Annular is a setup for running coupled energy system models with the aim of modeling flexibility scheduling and the policy regulations that affect the behavior of flexibility providers.
- Julia
- Jupyter Notebook
- Python
ApertureComplexity
Contains complete functionality of aperture complexity analysis. Extends methodology to any TPS exporting DICOM-RP.
- Treatment Planning and dosimetry
- Python