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Allelic Variation Explorer

If you are studying how single nucleotide polymorphisms are clustered in genomic samples, then the Allelic Variation Explorer can help you visualize them.


Cite this software

What Allelic Variation Explorer can do for you

  • It provides a genome browser with a track where the samples which have the same SNPs are clustered together, it can be used by bioinformations to explain why certain samples have the same phenotype
  • It takes variants of a large number of samples and for the requested genomic range it performs clustering and visualizes the clusters
  • the clustering is done quick and on the fly
  • the reference genome, gene and feature tracks are rendered from static files, so you don't need any application server just a static web server
Programming languages
  • Python 99%
  • AngelScript 1%
  • Dockerfile 1%
</>Source code

Participating organisations

Netherlands eScience Center
Wageningen University & Research


Mateusz Kuzak
Netherlands eScience Center

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Updated 14 months ago