All software
LinkAhead
Open Source Research Data Management Software
- Data
- Electronic Lab Notebook
- ETL
- + 9
- ANTLR
- C++
- CSS
- + 9
CHI2025_Plan-then-Execute_LLMAgent
User Interaction Dataset for CHI 2025 paper "Plan-Then-Execute: An Empirical Study of User Trust and Team Performance When Using LLM Agents As A Daily Assistant."
- Daily Assistant
- Human-AI Collaboration
- large language models
- + 2
- CSS
- HTML
- JavaScript
- + 7
QTLTableMiner++
Extract gene-trait associations from scientific literature
- Inter-operability & linked data
- Text analysis & natural language processing
- Java
- Shell
FAIR Data Station
A web application for creating, validating and managing research metadata using the ISA framework, turning it into FAIR RDF linked data ready for reuse and submission to public repositories.
- FAIR
- metadata
- Metadata Management
- + 1
- CSS
- HTML
- Java
- + 2
fltk
FLTK toolkit supporting the publication: Aergia: leveraging heterogeneity in federated learning systems
- federated learning
- resource heterogeneity
- Stragglers
- + 1
- Markdown
- Other
- Python
- + 2
MapReader
MapReader is an end-to-end computer vision (CV) pipeline for exploring and analyzing images at scale.
- computer vision
- digital humanities
- geospatial
- + 4
- Dockerfile
- Python
- Shell
- + 1
pbg-ld
Access integrated data on genes and associated traits in plants
- Data Analysis
- genomics
- Inter-operability & linked data
- Dockerfile
- Makefile
- PLpgSQL
- + 2
ChemSpaX: A Python tool for local chemical space exploration
ChemSpaX is a Python package that can be used for local chemical space exploration of any structure. This is done by placing substuents on a pre-defined skeleton. A substituent can be chosen from an existing library and can be attached to the skeleton.
- catalysis
- Chemistry
- python
- Python
- Shell
nanopub
The nanopub library provides a high-level, user-friendly python interface for searching, publishing and retracting nanopublications.
- Inter-operability & linked data
- JavaScript
- Python
- Shell
Xenon
If you are using remote machines to do your computations, and don’t feel like learning and implementing many different APIs, Xenon is the tool for you.
- batch-job
- distributed computing
- FTP
- + 11
- Batchfile
- Java
- Shell
Cross-perspective Topic Modeling
An application that uses cross-perspective topic modeling to extract topics and opinions from text and provides insight into how they change over time.
- Text analysis & natural language processing
- Jupyter Notebook
- Python
- Shell
PanVA
Variant Analysis within Pangenomes.
- API
- Data Analysis
- pangenomics
- CSS
- Dockerfile
- HTML
- + 6